miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2654 3' -41.2 NC_001491.2 + 108493 0.66 1
Target:  5'- -cUGGAGGGugcGUGCCCUCUga-UGgGCa -3'
miRNA:   3'- auAUUUCUU---UAUGGGAGGauaAUgCG- -5'
2654 3' -41.2 NC_001491.2 + 124123 0.67 1
Target:  5'- --cAAAGcag-ACCCacaccgCCUGUUGCGCc -3'
miRNA:   3'- auaUUUCuuuaUGGGa-----GGAUAAUGCG- -5'
2654 3' -41.2 NC_001491.2 + 941 0.67 1
Target:  5'- ----uGGAAGUGCCCaCCgAUUGgGCa -3'
miRNA:   3'- auauuUCUUUAUGGGaGGaUAAUgCG- -5'
2654 3' -41.2 NC_001491.2 + 14670 0.68 1
Target:  5'- gUAUAA--AAGUGCUCUCCUAgccgUGgGCg -3'
miRNA:   3'- -AUAUUucUUUAUGGGAGGAUa---AUgCG- -5'
2654 3' -41.2 NC_001491.2 + 32383 0.69 1
Target:  5'- --cGAAGAGcUGCCgCUCCg---GCGCc -3'
miRNA:   3'- auaUUUCUUuAUGG-GAGGauaaUGCG- -5'
2654 3' -41.2 NC_001491.2 + 128445 0.71 0.999996
Target:  5'- aAUAGAGggGUACCCcgacggCCUGccUAUGUu -3'
miRNA:   3'- aUAUUUCuuUAUGGGa-----GGAUa-AUGCG- -5'
2654 3' -41.2 NC_001491.2 + 107710 0.73 0.99991
Target:  5'- cUGUAGGGcuccagucUGCCCUCUUGUgGCGCa -3'
miRNA:   3'- -AUAUUUCuuu-----AUGGGAGGAUAaUGCG- -5'
2654 3' -41.2 NC_001491.2 + 69588 0.74 0.999813
Target:  5'- --aAAAGAAgGUGCCCUCCaaaagaguuucgucGUUACGCu -3'
miRNA:   3'- auaUUUCUU-UAUGGGAGGa-------------UAAUGCG- -5'
2654 3' -41.2 NC_001491.2 + 42551 0.76 0.998338
Target:  5'- --gAAGGggGUACCCgugCCUcccagcUUACGCa -3'
miRNA:   3'- auaUUUCuuUAUGGGa--GGAu-----AAUGCG- -5'
2654 3' -41.2 NC_001491.2 + 138892 0.77 0.996474
Target:  5'- gAUAGAGAGGcACCCUCUagccUACGCg -3'
miRNA:   3'- aUAUUUCUUUaUGGGAGGaua-AUGCG- -5'
2654 3' -41.2 NC_001491.2 + 96597 1.14 0.043415
Target:  5'- cUAUAAAGAAAUACCCUCCUAUUACGCg -3'
miRNA:   3'- -AUAUUUCUUUAUGGGAGGAUAAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.