Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2654 | 3' | -41.2 | NC_001491.2 | + | 108493 | 0.66 | 1 |
Target: 5'- -cUGGAGGGugcGUGCCCUCUga-UGgGCa -3' miRNA: 3'- auAUUUCUU---UAUGGGAGGauaAUgCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 124123 | 0.67 | 1 |
Target: 5'- --cAAAGcag-ACCCacaccgCCUGUUGCGCc -3' miRNA: 3'- auaUUUCuuuaUGGGa-----GGAUAAUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 941 | 0.67 | 1 |
Target: 5'- ----uGGAAGUGCCCaCCgAUUGgGCa -3' miRNA: 3'- auauuUCUUUAUGGGaGGaUAAUgCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 14670 | 0.68 | 1 |
Target: 5'- gUAUAA--AAGUGCUCUCCUAgccgUGgGCg -3' miRNA: 3'- -AUAUUucUUUAUGGGAGGAUa---AUgCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 32383 | 0.69 | 1 |
Target: 5'- --cGAAGAGcUGCCgCUCCg---GCGCc -3' miRNA: 3'- auaUUUCUUuAUGG-GAGGauaaUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 128445 | 0.71 | 0.999996 |
Target: 5'- aAUAGAGggGUACCCcgacggCCUGccUAUGUu -3' miRNA: 3'- aUAUUUCuuUAUGGGa-----GGAUa-AUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 107710 | 0.73 | 0.99991 |
Target: 5'- cUGUAGGGcuccagucUGCCCUCUUGUgGCGCa -3' miRNA: 3'- -AUAUUUCuuu-----AUGGGAGGAUAaUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 69588 | 0.74 | 0.999813 |
Target: 5'- --aAAAGAAgGUGCCCUCCaaaagaguuucgucGUUACGCu -3' miRNA: 3'- auaUUUCUU-UAUGGGAGGa-------------UAAUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 42551 | 0.76 | 0.998338 |
Target: 5'- --gAAGGggGUACCCgugCCUcccagcUUACGCa -3' miRNA: 3'- auaUUUCuuUAUGGGa--GGAu-----AAUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 138892 | 0.77 | 0.996474 |
Target: 5'- gAUAGAGAGGcACCCUCUagccUACGCg -3' miRNA: 3'- aUAUUUCUUUaUGGGAGGaua-AUGCG- -5' |
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2654 | 3' | -41.2 | NC_001491.2 | + | 96597 | 1.14 | 0.043415 |
Target: 5'- cUAUAAAGAAAUACCCUCCUAUUACGCg -3' miRNA: 3'- -AUAUUUCUUUAUGGGAGGAUAAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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