miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2654 5' -44.9 NC_001491.2 + 10730 0.66 0.999999
Target:  5'- cGGGCGUGGggacccgGGGAGAGaccaccaggCCu -3'
miRNA:   3'- -CCCGCAUUa------UCCUCUCauaacaua-GG- -5'
2654 5' -44.9 NC_001491.2 + 47264 0.66 0.999998
Target:  5'- aGGCGggcucgAGGAacacGAGUAUUGguacuuUCCg -3'
miRNA:   3'- cCCGCauua--UCCU----CUCAUAACau----AGG- -5'
2654 5' -44.9 NC_001491.2 + 37486 0.66 0.999997
Target:  5'- uGGUccGAggAGGAGAGUAgaaaggacucaaUGUGUCCa -3'
miRNA:   3'- cCCGcaUUa-UCCUCUCAUa-----------ACAUAGG- -5'
2654 5' -44.9 NC_001491.2 + 27816 0.66 0.999997
Target:  5'- aGGUGUGGaGGGAGAGgucaaaaggugUGUAUUg -3'
miRNA:   3'- cCCGCAUUaUCCUCUCaua--------ACAUAGg -5'
2654 5' -44.9 NC_001491.2 + 37 0.67 0.999984
Target:  5'- gGGGCGUGGUcuaAGGGGGGgg----GUCa -3'
miRNA:   3'- -CCCGCAUUA---UCCUCUCauaacaUAGg -5'
2654 5' -44.9 NC_001491.2 + 31356 0.68 0.999971
Target:  5'- gGGGCGUGGUuaccacccaagcggGGGAGAGgcccagg-CCg -3'
miRNA:   3'- -CCCGCAUUA--------------UCCUCUCauaacauaGG- -5'
2654 5' -44.9 NC_001491.2 + 7974 0.69 0.999903
Target:  5'- aGGCGU----GGuGAGUAccgGUAUCCg -3'
miRNA:   3'- cCCGCAuuauCCuCUCAUaa-CAUAGG- -5'
2654 5' -44.9 NC_001491.2 + 11693 0.69 0.999785
Target:  5'- uGGCG-AAUgcuucuuccGGGAGAGUGcUGggGUCCg -3'
miRNA:   3'- cCCGCaUUA---------UCCUCUCAUaACa-UAGG- -5'
2654 5' -44.9 NC_001491.2 + 67108 0.69 0.999725
Target:  5'- uGGGCGUugggGGGAGGGUGagGUua-Ca -3'
miRNA:   3'- -CCCGCAuua-UCCUCUCAUaaCAuagG- -5'
2654 5' -44.9 NC_001491.2 + 33969 0.69 0.999725
Target:  5'- cGGGgGgauguUGGGGGAGgcc-GUGUCCc -3'
miRNA:   3'- -CCCgCauu--AUCCUCUCauaaCAUAGG- -5'
2654 5' -44.9 NC_001491.2 + 24488 0.7 0.999444
Target:  5'- cGGGUggagaagacaccGUAGUGGGuGAGUGUggGUuuUCCa -3'
miRNA:   3'- -CCCG------------CAUUAUCCuCUCAUAa-CAu-AGG- -5'
2654 5' -44.9 NC_001491.2 + 23689 0.71 0.999123
Target:  5'- aGGGUGUGggAGGugguagcGGAGgcgugGUGUCCa -3'
miRNA:   3'- -CCCGCAUuaUCC-------UCUCauaa-CAUAGG- -5'
2654 5' -44.9 NC_001491.2 + 48645 0.72 0.997266
Target:  5'- cGGGCaaGcgGGGAGAGUGUcugGUGUUg -3'
miRNA:   3'- -CCCGcaUuaUCCUCUCAUAa--CAUAGg -5'
2654 5' -44.9 NC_001491.2 + 83219 0.72 0.99615
Target:  5'- cGGGUGUGugguuGGGGAGg--UGUuAUCCa -3'
miRNA:   3'- -CCCGCAUuau--CCUCUCauaACA-UAGG- -5'
2654 5' -44.9 NC_001491.2 + 96641 1.18 0.012128
Target:  5'- gGGGCGUAAUAGGAGAGUAUUGUAUCCa -3'
miRNA:   3'- -CCCGCAUUAUCCUCUCAUAACAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.