miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 13340 0.7 0.357112
Target:  5'- -cGCACGggCCugAccUCgGCGCCCGAGGa -3'
miRNA:   3'- gcCGUGCa-GGugU--AGgUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 13652 0.68 0.456536
Target:  5'- gCGGC-CGUCCAUGUCCuuggugauaugaccGCGCaCCGuGAg -3'
miRNA:   3'- -GCCGuGCAGGUGUAGG--------------UGCG-GGUuCU- -5'
26540 3' -56.7 NC_005357.1 + 13809 0.71 0.293324
Target:  5'- uGGC-CGgCCuCAUCCGCGCCCGGu- -3'
miRNA:   3'- gCCGuGCaGGuGUAGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 15381 0.68 0.459536
Target:  5'- uGaGCGCGUCCGCGUgCGgGCCgGcGAa -3'
miRNA:   3'- gC-CGUGCAGGUGUAgGUgCGGgUuCU- -5'
26540 3' -56.7 NC_005357.1 + 15539 0.67 0.500484
Target:  5'- -uGCACGgugCCgGCcUCCACGUCCAGGu -3'
miRNA:   3'- gcCGUGCa--GG-UGuAGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 17775 0.68 0.420438
Target:  5'- gGGCGCGacaaCAcCAUCCugGCCCGc-- -3'
miRNA:   3'- gCCGUGCag--GU-GUAGGugCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 18155 0.7 0.357112
Target:  5'- uGGuCACuGUCCgGCG-CCACGCUCAAGGu -3'
miRNA:   3'- gCC-GUG-CAGG-UGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18846 0.67 0.536509
Target:  5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3'
miRNA:   3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 20675 0.68 0.430025
Target:  5'- gCGGCcUGUCCuauguggacGCggCCGCGCCCAAc- -3'
miRNA:   3'- -GCCGuGCAGG---------UGuaGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 21146 0.67 0.521556
Target:  5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3'
miRNA:   3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5'
26540 3' -56.7 NC_005357.1 + 21747 0.73 0.209186
Target:  5'- gGGCGCGgCCGCGUCCAcauaggacaggcCGCCCGGc- -3'
miRNA:   3'- gCCGUGCaGGUGUAGGU------------GCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 23080 0.66 0.553776
Target:  5'- aCGGCAauUCCGCcgCCugGCGCCUguccgAAGAc -3'
miRNA:   3'- -GCCGUgcAGGUGuaGG--UGCGGG-----UUCU- -5'
26540 3' -56.7 NC_005357.1 + 23164 0.67 0.510974
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 24096 0.68 0.46961
Target:  5'- gGGCACGggcaccccgCUACAUgCGCGCgUAGGGg -3'
miRNA:   3'- gCCGUGCa--------GGUGUAgGUGCGgGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 24328 0.7 0.340291
Target:  5'- aCGGCgcgaagGCGUCCugGUUCGCGCCg---- -3'
miRNA:   3'- -GCCG------UGCAGGugUAGGUGCGGguucu -5'
26540 3' -56.7 NC_005357.1 + 24677 0.81 0.062247
Target:  5'- cCGcCGCGggCCACGUCCACGCCCAGGc -3'
miRNA:   3'- -GCcGUGCa-GGUGUAGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 25202 0.69 0.410981
Target:  5'- gGGUgAUGUCCaACGUCCGCGUCCu--- -3'
miRNA:   3'- gCCG-UGCAGG-UGUAGGUGCGGGuucu -5'
26540 3' -56.7 NC_005357.1 + 27842 0.7 0.365738
Target:  5'- uGGCGCcggCCGCG-CCGCuGCUCAAGAa -3'
miRNA:   3'- gCCGUGca-GGUGUaGGUG-CGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 28017 0.67 0.479796
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 28201 0.67 0.521556
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.