miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 5' -60 NC_005357.1 + 22440 0.68 0.28548
Target:  5'- ---gUUGGCGaguucuaCGCGGacaUCGGCGGCCUg -3'
miRNA:   3'- gaagAACUGCc------GCGCC---AGCCGCCGGA- -5'
26540 5' -60 NC_005357.1 + 17663 0.69 0.271586
Target:  5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3'
miRNA:   3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5'
26540 5' -60 NC_005357.1 + 40290 0.69 0.271586
Target:  5'- -----cGGCGGCGCGGUUGacCGGCUg -3'
miRNA:   3'- gaagaaCUGCCGCGCCAGCc-GCCGGa -5'
26540 5' -60 NC_005357.1 + 9688 0.69 0.264845
Target:  5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3'
miRNA:   3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5'
26540 5' -60 NC_005357.1 + 19321 0.69 0.260867
Target:  5'- cCUUCgaUGAaGGCGCGGUCuucggacaggcgccaGGCGGCg- -3'
miRNA:   3'- -GAAGa-ACUgCCGCGCCAG---------------CCGCCGga -5'
26540 5' -60 NC_005357.1 + 13521 0.69 0.251772
Target:  5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3'
miRNA:   3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5'
26540 5' -60 NC_005357.1 + 10690 0.69 0.251772
Target:  5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3'
miRNA:   3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5'
26540 5' -60 NC_005357.1 + 9226 0.7 0.239235
Target:  5'- gUUCU--GCGGCGCGccCGGCGGCa- -3'
miRNA:   3'- gAAGAacUGCCGCGCcaGCCGCCGga -5'
26540 5' -60 NC_005357.1 + 18457 0.7 0.233164
Target:  5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3'
miRNA:   3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5'
26540 5' -60 NC_005357.1 + 34387 0.7 0.221412
Target:  5'- -gUCaugGACGGCGgcaaGGaCGGCGGCCc -3'
miRNA:   3'- gaAGaa-CUGCCGCg---CCaGCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 37058 0.7 0.215727
Target:  5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3'
miRNA:   3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5'
26540 5' -60 NC_005357.1 + 23529 0.7 0.210168
Target:  5'- cCUUCcaGGCGGCgcacGCGGUCGaUGGCCUc -3'
miRNA:   3'- -GAAGaaCUGCCG----CGCCAGCcGCCGGA- -5'
26540 5' -60 NC_005357.1 + 5413 0.71 0.20366
Target:  5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3'
miRNA:   3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5'
26540 5' -60 NC_005357.1 + 18392 0.71 0.179353
Target:  5'- -----cGAUGGCGcCGGU-GGCGGCCa -3'
miRNA:   3'- gaagaaCUGCCGC-GCCAgCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 21276 0.72 0.174625
Target:  5'- -cUgUUGAaccagGGCGCGGacaCGGCGGCCa -3'
miRNA:   3'- gaAgAACUg----CCGCGCCa--GCCGCCGGa -5'
26540 5' -60 NC_005357.1 + 38874 0.72 0.1655
Target:  5'- -aUUUauGCGGCGCGGUUGGCGGgaCUg -3'
miRNA:   3'- gaAGAacUGCCGCGCCAGCCGCCg-GA- -5'
26540 5' -60 NC_005357.1 + 20607 0.73 0.129543
Target:  5'- cCUUCgccaGGCGGCGUcgcaGGUCGGUgucGGCCUg -3'
miRNA:   3'- -GAAGaa--CUGCCGCG----CCAGCCG---CCGGA- -5'
26540 5' -60 NC_005357.1 + 27521 0.74 0.126025
Target:  5'- gCUUCU---CGGCGCGGUCGG-GGUCUu -3'
miRNA:   3'- -GAAGAacuGCCGCGCCAGCCgCCGGA- -5'
26540 5' -60 NC_005357.1 + 29321 0.75 0.103783
Target:  5'- aCUUCaaGGCGGUgGCGGUCGcCGGCCa -3'
miRNA:   3'- -GAAGaaCUGCCG-CGCCAGCcGCCGGa -5'
26540 5' -60 NC_005357.1 + 14583 0.76 0.090215
Target:  5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3'
miRNA:   3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.