miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26541 3' -53.8 NC_005357.1 + 1239 0.66 0.763641
Target:  5'- cCCCUUgagugauauaaaaAUUcCGCCGUCCGGCgAGcgcCGGu -3'
miRNA:   3'- -GGGAA-------------UAA-GCGGCGGGUCG-UCaa-GCC- -5'
26541 3' -53.8 NC_005357.1 + 31234 0.66 0.754238
Target:  5'- cCCCggcg-CGCgGCCCAGCuacgagcCGGg -3'
miRNA:   3'- -GGGaauaaGCGgCGGGUCGucaa---GCC- -5'
26541 3' -53.8 NC_005357.1 + 42224 0.66 0.754238
Target:  5'- gCCa-GUUCGCCgugucGCCCGGCAGcgugaCGGu -3'
miRNA:   3'- gGGaaUAAGCGG-----CGGGUCGUCaa---GCC- -5'
26541 3' -53.8 NC_005357.1 + 2668 0.66 0.754238
Target:  5'- --------gGUCGCCCAGguGUUCGa -3'
miRNA:   3'- gggaauaagCGGCGGGUCguCAAGCc -5'
26541 3' -53.8 NC_005357.1 + 29666 0.66 0.743669
Target:  5'- -------cCGuuGCCCAGCAGggcgCGGc -3'
miRNA:   3'- gggaauaaGCggCGGGUCGUCaa--GCC- -5'
26541 3' -53.8 NC_005357.1 + 2063 0.66 0.732982
Target:  5'- uUCCUcggggUCGUCGCCCAGCAccaCGa -3'
miRNA:   3'- -GGGAaua--AGCGGCGGGUCGUcaaGCc -5'
26541 3' -53.8 NC_005357.1 + 5793 0.66 0.722191
Target:  5'- uCCCgccaUCGCgGCagcgCCAGCGGauagUCGGg -3'
miRNA:   3'- -GGGaauaAGCGgCG----GGUCGUCa---AGCC- -5'
26541 3' -53.8 NC_005357.1 + 27286 0.66 0.720021
Target:  5'- gCCCUgggcgcaucCGCCG-CCAGCAuGgggUCGGg -3'
miRNA:   3'- -GGGAauaa-----GCGGCgGGUCGU-Ca--AGCC- -5'
26541 3' -53.8 NC_005357.1 + 982 0.67 0.711307
Target:  5'- gCCac-UUgGCCGCCUGGCGGUgccgUGGu -3'
miRNA:   3'- gGGaauAAgCGGCGGGUCGUCAa---GCC- -5'
26541 3' -53.8 NC_005357.1 + 18112 0.67 0.711307
Target:  5'- gCCUUcg-CGCCGUCCGGUAcgUCGa -3'
miRNA:   3'- gGGAAuaaGCGGCGGGUCGUcaAGCc -5'
26541 3' -53.8 NC_005357.1 + 33599 0.67 0.711307
Target:  5'- gCCCgcGUUgCGgcuggcCCGaCCCAGCAGaUCGGu -3'
miRNA:   3'- -GGGaaUAA-GC------GGC-GGGUCGUCaAGCC- -5'
26541 3' -53.8 NC_005357.1 + 4864 0.67 0.700342
Target:  5'- gCCCggucaggUCGuuGCCCAGCg---CGGc -3'
miRNA:   3'- -GGGaaua---AGCggCGGGUCGucaaGCC- -5'
26541 3' -53.8 NC_005357.1 + 2732 0.67 0.700342
Target:  5'- aCgCUUGagCGCgGCCCGGCGcuGcUCGGg -3'
miRNA:   3'- -GgGAAUaaGCGgCGGGUCGU--CaAGCC- -5'
26541 3' -53.8 NC_005357.1 + 32632 0.67 0.689308
Target:  5'- gCCgcggUCGCUGUCCuGUcgaAGUUCGGc -3'
miRNA:   3'- gGGaauaAGCGGCGGGuCG---UCAAGCC- -5'
26541 3' -53.8 NC_005357.1 + 20191 0.67 0.689308
Target:  5'- gCCUUG-UCGUCGCCCucggucuuGGCAGcgcccgCGGc -3'
miRNA:   3'- gGGAAUaAGCGGCGGG--------UCGUCaa----GCC- -5'
26541 3' -53.8 NC_005357.1 + 33231 0.67 0.689308
Target:  5'- gCCg----CGCCGCCgAGCAGgccaacgUCGa -3'
miRNA:   3'- gGGaauaaGCGGCGGgUCGUCa------AGCc -5'
26541 3' -53.8 NC_005357.1 + 9403 0.67 0.667082
Target:  5'- -aCUUGcacUUGCCGCCCAGCA--UCGu -3'
miRNA:   3'- ggGAAUa--AGCGGCGGGUCGUcaAGCc -5'
26541 3' -53.8 NC_005357.1 + 7270 0.68 0.655912
Target:  5'- gCCUUGUgcaGCUuCUCGGCGGUggUCGGa -3'
miRNA:   3'- gGGAAUAag-CGGcGGGUCGUCA--AGCC- -5'
26541 3' -53.8 NC_005357.1 + 5231 0.68 0.64472
Target:  5'- aCCCagcaGUUCGCgcaguuCGgCCGGCAGgUCGGg -3'
miRNA:   3'- -GGGaa--UAAGCG------GCgGGUCGUCaAGCC- -5'
26541 3' -53.8 NC_005357.1 + 8681 0.68 0.633515
Target:  5'- -gCUgcugCGCCGCCCAGguGUgCGc -3'
miRNA:   3'- ggGAauaaGCGGCGGGUCguCAaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.