Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26541 | 3' | -53.8 | NC_005357.1 | + | 42224 | 0.66 | 0.754238 |
Target: 5'- gCCa-GUUCGCCgugucGCCCGGCAGcgugaCGGu -3' miRNA: 3'- gGGaaUAAGCGG-----CGGGUCGUCaa---GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 36968 | 0.71 | 0.430327 |
Target: 5'- aCC----UCGCCGCCCGGCGGgaacaUCGu -3' miRNA: 3'- gGGaauaAGCGGCGGGUCGUCa----AGCc -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 36674 | 0.69 | 0.555598 |
Target: 5'- gCCCUggcgcacUCGCUGCCCGGCGcgcUGGg -3' miRNA: 3'- -GGGAaua----AGCGGCGGGUCGUcaaGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 33599 | 0.67 | 0.711307 |
Target: 5'- gCCCgcGUUgCGgcuggcCCGaCCCAGCAGaUCGGu -3' miRNA: 3'- -GGGaaUAA-GC------GGC-GGGUCGUCaAGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 33231 | 0.67 | 0.689308 |
Target: 5'- gCCg----CGCCGCCgAGCAGgccaacgUCGa -3' miRNA: 3'- gGGaauaaGCGGCGGgUCGUCa------AGCc -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 32959 | 0.68 | 0.622309 |
Target: 5'- gCCCgaagaAUUCGCUGCCUAuCAGgcccUCGGc -3' miRNA: 3'- -GGGaa---UAAGCGGCGGGUcGUCa---AGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 32632 | 0.67 | 0.689308 |
Target: 5'- gCCgcggUCGCUGUCCuGUcgaAGUUCGGc -3' miRNA: 3'- gGGaauaAGCGGCGGGuCG---UCAAGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 32378 | 0.68 | 0.611112 |
Target: 5'- cCCCg-----GCCGCCCAGCAGg---- -3' miRNA: 3'- -GGGaauaagCGGCGGGUCGUCaagcc -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 31234 | 0.66 | 0.754238 |
Target: 5'- cCCCggcg-CGCgGCCCAGCuacgagcCGGg -3' miRNA: 3'- -GGGaauaaGCGgCGGGUCGucaa---GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 29666 | 0.66 | 0.743669 |
Target: 5'- -------cCGuuGCCCAGCAGggcgCGGc -3' miRNA: 3'- gggaauaaGCggCGGGUCGUCaa--GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 28178 | 0.7 | 0.522977 |
Target: 5'- gCCg---UUGCCcacGCCCAGCAGgugCGGc -3' miRNA: 3'- gGGaauaAGCGG---CGGGUCGUCaa-GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 27886 | 0.69 | 0.544651 |
Target: 5'- aUCUUGgcgUGCuCGCCCAGCAcGUcgCGGa -3' miRNA: 3'- gGGAAUaa-GCG-GCGGGUCGU-CAa-GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 27286 | 0.66 | 0.720021 |
Target: 5'- gCCCUgggcgcaucCGCCG-CCAGCAuGgggUCGGg -3' miRNA: 3'- -GGGAauaa-----GCGGCgGGUCGU-Ca--AGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 23949 | 0.69 | 0.555598 |
Target: 5'- -------gCGCCGCCCGGCgAGgUCGGc -3' miRNA: 3'- gggaauaaGCGGCGGGUCG-UCaAGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 20191 | 0.67 | 0.689308 |
Target: 5'- gCCUUG-UCGUCGCCCucggucuuGGCAGcgcccgCGGc -3' miRNA: 3'- gGGAAUaAGCGGCGGG--------UCGUCaa----GCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 18112 | 0.67 | 0.711307 |
Target: 5'- gCCUUcg-CGCCGUCCGGUAcgUCGa -3' miRNA: 3'- gGGAAuaaGCGGCGGGUCGUcaAGCc -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 17624 | 0.7 | 0.512264 |
Target: 5'- gCCUcgaUGUUUGCCGCaucgugCGGCAGUaCGGc -3' miRNA: 3'- gGGA---AUAAGCGGCGg-----GUCGUCAaGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 16667 | 0.71 | 0.430327 |
Target: 5'- aUCgUUGc-CGCCGCCCAGCAGcgCGc -3' miRNA: 3'- -GGgAAUaaGCGGCGGGUCGUCaaGCc -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 11999 | 0.69 | 0.577673 |
Target: 5'- gCCUUuuccaCGUCGgCCAGCAGcgCGGc -3' miRNA: 3'- gGGAAuaa--GCGGCgGGUCGUCaaGCC- -5' |
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26541 | 3' | -53.8 | NC_005357.1 | + | 10284 | 0.7 | 0.49112 |
Target: 5'- gCCC-UGUagGUCGUCCAGCAccUCGGg -3' miRNA: 3'- -GGGaAUAagCGGCGGGUCGUcaAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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