miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26541 5' -55 NC_005357.1 + 2725 0.65 0.670463
Target:  5'- uGGCCGGA-CGCUUGAgcgcGGcccggcgcUGCUCGGGc -3'
miRNA:   3'- -UCGGCUUgGCGAGCUa---CC--------ACGAGUUC- -5'
26541 5' -55 NC_005357.1 + 23560 0.65 0.670463
Target:  5'- cGGCCGAcAUCGC-CGGcaGGUGCgggCGGGg -3'
miRNA:   3'- -UCGGCU-UGGCGaGCUa-CCACGa--GUUC- -5'
26541 5' -55 NC_005357.1 + 39027 0.66 0.659222
Target:  5'- cGCCuacGAaaaugGCCGCgugugGGUGCUCAAGa -3'
miRNA:   3'- uCGG---CU-----UGGCGagcuaCCACGAGUUC- -5'
26541 5' -55 NC_005357.1 + 17226 0.66 0.659222
Target:  5'- aAGCCGGGCCaGCggUCGcgcGUGCUCAu- -3'
miRNA:   3'- -UCGGCUUGG-CG--AGCuacCACGAGUuc -5'
26541 5' -55 NC_005357.1 + 10822 0.66 0.647955
Target:  5'- cGGCUGAAUCcuuccgGCUCGGUcuugaGGUGgUCGAGc -3'
miRNA:   3'- -UCGGCUUGG------CGAGCUA-----CCACgAGUUC- -5'
26541 5' -55 NC_005357.1 + 6770 0.66 0.647955
Target:  5'- uGgCGAcCUGCUCGAUGGccugGUUCAGc -3'
miRNA:   3'- uCgGCUuGGCGAGCUACCa---CGAGUUc -5'
26541 5' -55 NC_005357.1 + 14936 0.66 0.636672
Target:  5'- cGGCCGAgGCCGCcggcauccUCGcGUGGUGCguggCGGc -3'
miRNA:   3'- -UCGGCU-UGGCG--------AGC-UACCACGa---GUUc -5'
26541 5' -55 NC_005357.1 + 30665 0.66 0.625385
Target:  5'- cGUCGGGCCGCUgGGUGuagGCggCGGGa -3'
miRNA:   3'- uCGGCUUGGCGAgCUACca-CGa-GUUC- -5'
26541 5' -55 NC_005357.1 + 13863 0.66 0.625385
Target:  5'- uGGCCGAcguGCgCGCcgCGAUGGccgGCggccgCAAGg -3'
miRNA:   3'- -UCGGCU---UG-GCGa-GCUACCa--CGa----GUUC- -5'
26541 5' -55 NC_005357.1 + 11181 0.66 0.614105
Target:  5'- cGCUGGucgGCCGUggUGAUGGUGCggUCAAu -3'
miRNA:   3'- uCGGCU---UGGCGa-GCUACCACG--AGUUc -5'
26541 5' -55 NC_005357.1 + 34999 0.66 0.614105
Target:  5'- aAGCCGAACUGCUggcCGGccauccGGUGCccggcuUCAAGc -3'
miRNA:   3'- -UCGGCUUGGCGA---GCUa-----CCACG------AGUUC- -5'
26541 5' -55 NC_005357.1 + 28147 0.66 0.614105
Target:  5'- gGGCCGcAUCGC-CGAcagcaUGGUGCagCAGGc -3'
miRNA:   3'- -UCGGCuUGGCGaGCU-----ACCACGa-GUUC- -5'
26541 5' -55 NC_005357.1 + 4177 0.66 0.614105
Target:  5'- uAGCCG-GCCGcCUCGAUGGcggGCa---- -3'
miRNA:   3'- -UCGGCuUGGC-GAGCUACCa--CGaguuc -5'
26541 5' -55 NC_005357.1 + 30184 0.66 0.610723
Target:  5'- cGCCGAuCCGUUCGAUGccgcuguugccgguGUGCUgcgucccgacCAGGg -3'
miRNA:   3'- uCGGCUuGGCGAGCUAC--------------CACGA----------GUUC- -5'
26541 5' -55 NC_005357.1 + 9737 0.67 0.602841
Target:  5'- cGGgCGAACUGCUCG-UGGUGggcgcgcuucgcCUCGAa -3'
miRNA:   3'- -UCgGCUUGGCGAGCuACCAC------------GAGUUc -5'
26541 5' -55 NC_005357.1 + 22134 0.67 0.602841
Target:  5'- cGGUCGAACagGCUuugcaCGGUGGUGCUgCAc- -3'
miRNA:   3'- -UCGGCUUGg-CGA-----GCUACCACGA-GUuc -5'
26541 5' -55 NC_005357.1 + 31301 0.67 0.585997
Target:  5'- aGGCCGAACUGCUCGcacguuugaaccaauUggccgcagccgacaaGGUGCUCGc- -3'
miRNA:   3'- -UCGGCUUGGCGAGCu--------------A---------------CCACGAGUuc -5'
26541 5' -55 NC_005357.1 + 35433 0.67 0.558142
Target:  5'- gAGCCGAcCCGCUCGcgcGUGUgaaagccaUCGAGa -3'
miRNA:   3'- -UCGGCUuGGCGAGCuacCACG--------AGUUC- -5'
26541 5' -55 NC_005357.1 + 12964 0.67 0.558142
Target:  5'- uGGCCGcg-CGCUCGucgccUGGUGC-CAGGa -3'
miRNA:   3'- -UCGGCuugGCGAGCu----ACCACGaGUUC- -5'
26541 5' -55 NC_005357.1 + 9223 0.68 0.503715
Target:  5'- uGGCCGuGCCGCgauagccagCGGUGGccgUGC-CGAGg -3'
miRNA:   3'- -UCGGCuUGGCGa--------GCUACC---ACGaGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.