miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 29870 0.68 0.282763
Target:  5'- -cGCAGCgcgaGGCCGG-CAagaaauucACCGaCGCCGa -3'
miRNA:   3'- caCGUCG----UCGGCCaGU--------UGGC-GCGGCg -5'
26542 5' -60.5 NC_005357.1 + 17963 0.68 0.247257
Target:  5'- -gGCaAGCAGCaGGUCGucggcgucaaugucGCCGagGCCGCg -3'
miRNA:   3'- caCG-UCGUCGgCCAGU--------------UGGCg-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 23935 0.68 0.282763
Target:  5'- -cGCAGCAagauggucauCCGGuggacgaaUCGGCCGaCGCCGCc -3'
miRNA:   3'- caCGUCGUc---------GGCC--------AGUUGGC-GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 14590 0.68 0.279948
Target:  5'- -aGCAGCGGCgCGGcCGGCgccaccgcgggcaGCGCgCGCg -3'
miRNA:   3'- caCGUCGUCG-GCCaGUUGg------------CGCG-GCG- -5'
26542 5' -60.5 NC_005357.1 + 5117 0.68 0.282763
Target:  5'- gGUGCGGCuggcGCCGuUgAACUGCaacguGCCGCg -3'
miRNA:   3'- -CACGUCGu---CGGCcAgUUGGCG-----CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 30842 0.68 0.25561
Target:  5'- -gGCGGcCAGCCGG-CGGCCcuGgGCgGCa -3'
miRNA:   3'- caCGUC-GUCGGCCaGUUGG--CgCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 29562 0.68 0.26891
Target:  5'- cGUGCucggGGUAucGCgucaGGUCGGCCGCGCCcagGCg -3'
miRNA:   3'- -CACG----UCGU--CGg---CCAGUUGGCGCGG---CG- -5'
26542 5' -60.5 NC_005357.1 + 24417 0.68 0.282763
Target:  5'- -aGC-GCAGCCGGcccgauuugUCGguGCCGCG-CGCg -3'
miRNA:   3'- caCGuCGUCGGCC---------AGU--UGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 31626 0.68 0.282057
Target:  5'- -cGCAGCguggcagGGCCucaaGG-CAuACCGUGCCGCu -3'
miRNA:   3'- caCGUCG-------UCGG----CCaGU-UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 602 0.68 0.262192
Target:  5'- -gGCcGCcuGCgGGUCGGCCagcaGCGCCGUg -3'
miRNA:   3'- caCGuCGu-CGgCCAGUUGG----CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33764 0.68 0.262192
Target:  5'- -cGCAGCAGCCGcugCAcacagcgaguACgGCGCgGCc -3'
miRNA:   3'- caCGUCGUCGGCca-GU----------UGgCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 30201 0.68 0.275767
Target:  5'- -aGUAGCcGCCGGgcuugAGCaCGCGCaCGCa -3'
miRNA:   3'- caCGUCGuCGGCCag---UUG-GCGCG-GCG- -5'
26542 5' -60.5 NC_005357.1 + 11133 0.68 0.249164
Target:  5'- cGUGCgAGCAGuUCGGcCugcuGCUGgGCCGCc -3'
miRNA:   3'- -CACG-UCGUC-GGCCaGu---UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2235 0.68 0.249164
Target:  5'- -cGCAGCAGgCGGcgCGugGCCGCGCa-- -3'
miRNA:   3'- caCGUCGUCgGCCa-GU--UGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 21540 0.68 0.260203
Target:  5'- uUGcCGGCAGUCGGuuccguggucgaaaUCAcgGCgCGCGCCGUc -3'
miRNA:   3'- cAC-GUCGUCGGCC--------------AGU--UG-GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 22840 0.68 0.275767
Target:  5'- cUGCcGaCAGCCGa-CAGCgCGCGCUGCg -3'
miRNA:   3'- cACGuC-GUCGGCcaGUUG-GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 16513 0.68 0.282057
Target:  5'- -aGCgAGguGCCGGUggucuggccgauaUAGCCGUacagGCCGCc -3'
miRNA:   3'- caCG-UCguCGGCCA-------------GUUGGCG----CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 15246 0.68 0.249164
Target:  5'- --aCGGCAGagGGUCGGCC-UGCCGCa -3'
miRNA:   3'- cacGUCGUCggCCAGUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 17867 0.68 0.282763
Target:  5'- ----cGUGGCCGGccUCGccaucGCCGCGCUGCg -3'
miRNA:   3'- cacguCGUCGGCC--AGU-----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28168 0.68 0.28065
Target:  5'- gGUGCAGCAgGCCaaccaguugcgcguGGacgacgcacUUAACCGCGCCa- -3'
miRNA:   3'- -CACGUCGU-CGG--------------CC---------AGUUGGCGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.