miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 16809 0.78 0.054585
Target:  5'- -cGC-GCuGCUGG-CGACCGCGCCGCc -3'
miRNA:   3'- caCGuCGuCGGCCaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 17867 0.68 0.282763
Target:  5'- ----cGUGGCCGGccUCGccaucGCCGCGCUGCg -3'
miRNA:   3'- cacguCGUCGGCC--AGU-----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 17963 0.68 0.247257
Target:  5'- -gGCaAGCAGCaGGUCGucggcgucaaugucGCCGagGCCGCg -3'
miRNA:   3'- caCG-UCGUCGgCCAGU--------------UGGCg-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 18246 0.69 0.213276
Target:  5'- cUGCuGgAuGCCGGUCAcgACCuGCGCCGa -3'
miRNA:   3'- cACGuCgU-CGGCCAGU--UGG-CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 18590 0.68 0.25561
Target:  5'- -cGCcuGCcuGCUGGUCAcGCCgGUGCCGCa -3'
miRNA:   3'- caCGu-CGu-CGGCCAGU-UGG-CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 18710 0.66 0.376819
Target:  5'- -aGCAGCAGCgcauCGGUaCGGCgGCacgggauGCCGUc -3'
miRNA:   3'- caCGUCGUCG----GCCA-GUUGgCG-------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 19029 0.73 0.12418
Target:  5'- gGUGCGGUAGCCcuGGUagCGGCCGCcgGCgGCg -3'
miRNA:   3'- -CACGUCGUCGG--CCA--GUUGGCG--CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 19483 0.67 0.289899
Target:  5'- -cGcCAGguGCCGGUgGGCagGCcGCUGCg -3'
miRNA:   3'- caC-GUCguCGGCCAgUUGg-CG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 19544 0.77 0.063025
Target:  5'- -cGCAGCAGUCGuUCAACCGCGCg-- -3'
miRNA:   3'- caCGUCGUCGGCcAGUUGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 20190 0.66 0.377693
Target:  5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3'
miRNA:   3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 20285 0.75 0.086245
Target:  5'- aGUGCAGCaccaccgugcaaAGCCuGuUCGACCGCGgCGCg -3'
miRNA:   3'- -CACGUCG------------UCGGcC-AGUUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 20307 0.67 0.289899
Target:  5'- uUGCucGGCGGCCGGUUgcgAugCGgGCUGg -3'
miRNA:   3'- cACG--UCGUCGGCCAG---UugGCgCGGCg -5'
26542 5' -60.5 NC_005357.1 + 20667 0.7 0.186846
Target:  5'- cGUGCcgGGCGGCCuGUCcuauguggacgcGGCCGCGCC-Ca -3'
miRNA:   3'- -CACG--UCGUCGGcCAG------------UUGGCGCGGcG- -5'
26542 5' -60.5 NC_005357.1 + 21189 0.66 0.335675
Target:  5'- -cGCGGCcugcuGCUGGUCug-CGCGuuGCu -3'
miRNA:   3'- caCGUCGu----CGGCCAGuugGCGCggCG- -5'
26542 5' -60.5 NC_005357.1 + 21250 0.71 0.154712
Target:  5'- -aGCAGCAgGCCGcG-CAgcagGCCGCGCUGUu -3'
miRNA:   3'- caCGUCGU-CGGC-CaGU----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21540 0.68 0.260203
Target:  5'- uUGcCGGCAGUCGGuuccguggucgaaaUCAcgGCgCGCGCCGUc -3'
miRNA:   3'- cAC-GUCGUCGGCC--------------AGU--UG-GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21656 0.7 0.202338
Target:  5'- cGUGCAGCcGCgCGaugaGUCGAgCGCGgCGCa -3'
miRNA:   3'- -CACGUCGuCG-GC----CAGUUgGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 21822 0.72 0.152204
Target:  5'- uUGCAGCGGCgGGUUgcucuuguagucgauGGCCuGCGCCuuGCg -3'
miRNA:   3'- cACGUCGUCGgCCAG---------------UUGG-CGCGG--CG- -5'
26542 5' -60.5 NC_005357.1 + 22790 0.7 0.207745
Target:  5'- -cGCccuGCgGGCCGGUCAGCaugGUGCCGg -3'
miRNA:   3'- caCGu--CG-UCGGCCAGUUGg--CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 22840 0.68 0.275767
Target:  5'- cUGCcGaCAGCCGa-CAGCgCGCGCUGCg -3'
miRNA:   3'- cACGuC-GUCGGCcaGUUG-GCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.