miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 23188 0.7 0.19189
Target:  5'- gGUGCgacAGCAGCaGGUCGGCCuCGUCGg -3'
miRNA:   3'- -CACG---UCGUCGgCCAGUUGGcGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 23643 0.66 0.360468
Target:  5'- -cGCGGUAGCCGG-CGGCgG-GCaGCa -3'
miRNA:   3'- caCGUCGUCGGCCaGUUGgCgCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 23750 0.69 0.218933
Target:  5'- -aGCAGCGccauGCCGGcgCcACCgggccgauGCGCCGCg -3'
miRNA:   3'- caCGUCGU----CGGCCa-GuUGG--------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 23935 0.68 0.282763
Target:  5'- -cGCAGCAagauggucauCCGGuggacgaaUCGGCCGaCGCCGCc -3'
miRNA:   3'- caCGUCGUc---------GGCC--------AGUUGGC-GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 24301 0.66 0.352064
Target:  5'- -gGgGGCGGUgaGGUCGGCgaGCaGCCGCg -3'
miRNA:   3'- caCgUCGUCGg-CCAGUUGg-CG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 24417 0.68 0.282763
Target:  5'- -aGC-GCAGCCGGcccgauuugUCGguGCCGCG-CGCg -3'
miRNA:   3'- caCGuCGUCGGCC---------AGU--UGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 24712 0.74 0.108036
Target:  5'- -cGguGcCAGUCGGUCGggccgcuuccACCGCGCCuGCg -3'
miRNA:   3'- caCguC-GUCGGCCAGU----------UGGCGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 24811 0.69 0.218933
Target:  5'- aUGCGGCAaacaucgagGCCGGUaucgacaacgcgCAGCCGUuuaGCUGCg -3'
miRNA:   3'- cACGUCGU---------CGGCCA------------GUUGGCG---CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25486 0.69 0.236677
Target:  5'- -gGCGGCAcGCUGcUgGACgGCGCCGUg -3'
miRNA:   3'- caCGUCGU-CGGCcAgUUGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25593 0.72 0.131244
Target:  5'- cGUGCAuccgaacuauGC-GCCGcGUgAACUGCGCCGCc -3'
miRNA:   3'- -CACGU----------CGuCGGC-CAgUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25748 0.67 0.304592
Target:  5'- -gGCAGCAcGCUGGg----CGCGCUGCu -3'
miRNA:   3'- caCGUCGU-CGGCCaguugGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25799 0.66 0.369012
Target:  5'- -cGCGGCGcGCuCGGuaUCGuugaucugcACCGgGCCGCc -3'
miRNA:   3'- caCGUCGU-CG-GCC--AGU---------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25828 0.66 0.359622
Target:  5'- -gGCGGC-GCCaacaccaucgcguGGUCGGCCucguccggcGCGUCGCg -3'
miRNA:   3'- caCGUCGuCGG-------------CCAGUUGG---------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 26263 0.66 0.335675
Target:  5'- -gGCAcccGcCGGCCuGGUCGGCuCGCGCauCGCg -3'
miRNA:   3'- caCGU---C-GUCGG-CCAGUUG-GCGCG--GCG- -5'
26542 5' -60.5 NC_005357.1 + 26327 0.74 0.10044
Target:  5'- cGUGCAGcCGGUCguGGUCAacaacacgaccaucuACgGCGCCGCg -3'
miRNA:   3'- -CACGUC-GUCGG--CCAGU---------------UGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27506 0.67 0.289899
Target:  5'- -cGCAGUcggcacuugaGGCCGGcCAGCagcagauCGCCGCg -3'
miRNA:   3'- caCGUCG----------UCGGCCaGUUGgc-----GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27583 0.71 0.167822
Target:  5'- cGUGCGGC-GCUGGccgccaacggcaUCGACCugggcgaaggcaGCGCCGCc -3'
miRNA:   3'- -CACGUCGuCGGCC------------AGUUGG------------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27701 0.66 0.335675
Target:  5'- -gGCcGCGcGCCGG-CAGCgGCucGCCGCc -3'
miRNA:   3'- caCGuCGU-CGGCCaGUUGgCG--CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27832 0.72 0.142537
Target:  5'- cUGCccGCGGUgGcGcCGGCCGCGCCGCu -3'
miRNA:   3'- cACGu-CGUCGgC-CaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28149 0.72 0.146495
Target:  5'- -aGCAGCuuGCCGGuggucagaUCGACCaCGCCGUu -3'
miRNA:   3'- caCGUCGu-CGGCC--------AGUUGGcGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.