miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 19029 0.73 0.12418
Target:  5'- gGUGCGGUAGCCcuGGUagCGGCCGCcgGCgGCg -3'
miRNA:   3'- -CACGUCGUCGG--CCA--GUUGGCG--CGgCG- -5'
26542 5' -60.5 NC_005357.1 + 39676 0.73 0.120782
Target:  5'- -gGCAGUGGUCGG-CAcgcccgagcagcGCCGgGCCGCg -3'
miRNA:   3'- caCGUCGUCGGCCaGU------------UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 24712 0.74 0.108036
Target:  5'- -cGguGcCAGUCGGUCGggccgcuuccACCGCGCCuGCg -3'
miRNA:   3'- caCguC-GUCGGCCAGU----------UGGCGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 7333 0.75 0.087972
Target:  5'- -cGCAGCAGCCGGUUGGCgucgaucaaccacuCGUGCCa- -3'
miRNA:   3'- caCGUCGUCGGCCAGUUG--------------GCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 8785 0.76 0.074822
Target:  5'- -cGCGGC-GCacgaugGGUCGGCCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGg-----CCAGUUGGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 31291 0.71 0.163345
Target:  5'- -gGCAGCgaAGCCuGG-CGACCGCGUgGUg -3'
miRNA:   3'- caCGUCG--UCGG-CCaGUUGGCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 15538 0.71 0.166467
Target:  5'- aUGCAcGguGCCGGccuccacguccaggUCAAUgGCGCCGUc -3'
miRNA:   3'- cACGU-CguCGGCC--------------AGUUGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2235 0.68 0.249164
Target:  5'- -cGCAGCAGgCGGcgCGugGCCGCGCa-- -3'
miRNA:   3'- caCGUCGUCgGCCa-GU--UGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 13298 0.69 0.236677
Target:  5'- uUGCAGCGcGCCGGg--GCCgGCGuuGUa -3'
miRNA:   3'- cACGUCGU-CGGCCaguUGG-CGCggCG- -5'
26542 5' -60.5 NC_005357.1 + 3564 0.69 0.235457
Target:  5'- -cGCAGCAGCgGGcugggcguacacCGAuCCGCGgCCGCc -3'
miRNA:   3'- caCGUCGUCGgCCa-----------GUU-GGCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 31699 0.69 0.218933
Target:  5'- cUGCAGCAccGCCuGacCAGCC-CGCCGCg -3'
miRNA:   3'- cACGUCGU--CGGcCa-GUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 23750 0.69 0.218933
Target:  5'- -aGCAGCGccauGCCGGcgCcACCgggccgauGCGCCGCg -3'
miRNA:   3'- caCGUCGU----CGGCCa-GuUGG--------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 18246 0.69 0.213276
Target:  5'- cUGCuGgAuGCCGGUCAcgACCuGCGCCGa -3'
miRNA:   3'- cACGuCgU-CGGCCAGU--UGG-CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 4529 0.69 0.213276
Target:  5'- -cGUGGCGuGCUGGgCggUCGUGCCGCc -3'
miRNA:   3'- caCGUCGU-CGGCCaGuuGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 34522 0.69 0.212717
Target:  5'- -cGCaacgAGCAGCUGG-CGAUcuacgcaCGCGCCGCc -3'
miRNA:   3'- caCG----UCGUCGGCCaGUUG-------GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 22790 0.7 0.207745
Target:  5'- -cGCccuGCgGGCCGGUCAGCaugGUGCCGg -3'
miRNA:   3'- caCGu--CG-UCGGCCAGUUGg--CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 23188 0.7 0.19189
Target:  5'- gGUGCgacAGCAGCaGGUCGGCCuCGUCGg -3'
miRNA:   3'- -CACG---UCGUCGgCCAGUUGGcGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 8400 0.7 0.19189
Target:  5'- cUGC-GUAGCCaGUCGGCCaGgGCCGUg -3'
miRNA:   3'- cACGuCGUCGGcCAGUUGG-CgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 32806 0.7 0.185356
Target:  5'- gGUGCuGCGcgucuGCCGGUCGgacuacaccaGCCGCaacggcuucgccugGCCGCa -3'
miRNA:   3'- -CACGuCGU-----CGGCCAGU----------UGGCG--------------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 38000 0.71 0.167822
Target:  5'- gGUGUuGCGGCCGGguaCGACCuacgacUGCCGCa -3'
miRNA:   3'- -CACGuCGUCGGCCa--GUUGGc-----GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.