miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 477 0.68 0.254959
Target:  5'- cUGUcGCGGUCGGaugccUCGgcagcauACUGCGCCGCg -3'
miRNA:   3'- cACGuCGUCGGCC-----AGU-------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 15246 0.68 0.249164
Target:  5'- --aCGGCAGagGGUCGGCC-UGCCGCa -3'
miRNA:   3'- cacGUCGUCggCCAGUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 11133 0.68 0.249164
Target:  5'- cGUGCgAGCAGuUCGGcCugcuGCUGgGCCGCc -3'
miRNA:   3'- -CACG-UCGUC-GGCCaGu---UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2235 0.68 0.249164
Target:  5'- -cGCAGCAGgCGGcgCGugGCCGCGCa-- -3'
miRNA:   3'- caCGUCGUCgGCCa-GU--UGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 13298 0.69 0.236677
Target:  5'- uUGCAGCGcGCCGGg--GCCgGCGuuGUa -3'
miRNA:   3'- cACGUCGU-CGGCCaguUGG-CGCggCG- -5'
26542 5' -60.5 NC_005357.1 + 3564 0.69 0.235457
Target:  5'- -cGCAGCAGCgGGcugggcguacacCGAuCCGCGgCCGCc -3'
miRNA:   3'- caCGUCGUCGgCCa-----------GUU-GGCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 23188 0.7 0.19189
Target:  5'- gGUGCgacAGCAGCaGGUCGGCCuCGUCGg -3'
miRNA:   3'- -CACG---UCGUCGgCCAGUUGGcGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 22790 0.7 0.207745
Target:  5'- -cGCccuGCgGGCCGGUCAGCaugGUGCCGg -3'
miRNA:   3'- caCGu--CG-UCGGCCAGUUGg--CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 34522 0.69 0.212717
Target:  5'- -cGCaacgAGCAGCUGG-CGAUcuacgcaCGCGCCGCc -3'
miRNA:   3'- caCG----UCGUCGGCCaGUUG-------GCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4529 0.69 0.213276
Target:  5'- -cGUGGCGuGCUGGgCggUCGUGCCGCc -3'
miRNA:   3'- caCGUCGU-CGGCCaGuuGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 18246 0.69 0.213276
Target:  5'- cUGCuGgAuGCCGGUCAcgACCuGCGCCGa -3'
miRNA:   3'- cACGuCgU-CGGCCAGU--UGG-CGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 23750 0.69 0.218933
Target:  5'- -aGCAGCGccauGCCGGcgCcACCgggccgauGCGCCGCg -3'
miRNA:   3'- caCGUCGU----CGGCCa-GuUGG--------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 31699 0.69 0.218933
Target:  5'- cUGCAGCAccGCCuGacCAGCC-CGCCGCg -3'
miRNA:   3'- cACGUCGU--CGGcCa-GUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 20285 0.75 0.086245
Target:  5'- aGUGCAGCaccaccgugcaaAGCCuGuUCGACCGCGgCGCg -3'
miRNA:   3'- -CACGUCG------------UCGGcC-AGUUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 10726 0.75 0.081489
Target:  5'- -cGCGGCgGGCUGGUCAgGCgGUGCUGCa -3'
miRNA:   3'- caCGUCG-UCGGCCAGU-UGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 10058 0.75 0.081489
Target:  5'- cUGCugGGCGGCCGGggccUCGGCgGCGaCCGCa -3'
miRNA:   3'- cACG--UCGUCGGCC----AGUUGgCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 4416 0.76 0.070671
Target:  5'- cGUGCGGCAGUCguaGGUCGuacCCG-GCCGCa -3'
miRNA:   3'- -CACGUCGUCGG---CCAGUu--GGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 19544 0.77 0.063025
Target:  5'- -cGCAGCAGUCGuUCAACCGCGCg-- -3'
miRNA:   3'- caCGUCGUCGGCcAGUUGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 16809 0.78 0.054585
Target:  5'- -cGC-GCuGCUGG-CGACCGCGCCGCc -3'
miRNA:   3'- caCGuCGuCGGCCaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 20190 0.66 0.377693
Target:  5'- -cGCcaucGCGGCCGa-CAACCaGgGCCGCg -3'
miRNA:   3'- caCGu---CGUCGGCcaGUUGG-CgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.