miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 9002 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9146 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21250 0.71 0.154712
Target:  5'- -aGCAGCAgGCCGcG-CAgcagGCCGCGCUGUu -3'
miRNA:   3'- caCGUCGU-CGGC-CaGU----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27583 0.71 0.167822
Target:  5'- cGUGCGGC-GCUGGccgccaacggcaUCGACCugggcgaaggcaGCGCCGCc -3'
miRNA:   3'- -CACGUCGuCGGCC------------AGUUGG------------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 760 0.69 0.216655
Target:  5'- -cGUAGUuguucaccgucuuGCCGGUCAgAUCGgGCCGCu -3'
miRNA:   3'- caCGUCGu------------CGGCCAGU-UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33047 0.67 0.327692
Target:  5'- aUGCAGUGGCUGcaCAauGCaCGCGgCCGCa -3'
miRNA:   3'- cACGUCGUCGGCcaGU--UG-GCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 4368 0.67 0.304592
Target:  5'- -gGaCGGCAGgCGGaugcgCAGCCagGCGCCGUc -3'
miRNA:   3'- caC-GUCGUCgGCCa----GUUGG--CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2828 0.67 0.289899
Target:  5'- gGUGCucGCGGCCacgcgCAGCgGCGCCaGCa -3'
miRNA:   3'- -CACGu-CGUCGGcca--GUUGgCGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 17867 0.68 0.282763
Target:  5'- ----cGUGGCCGGccUCGccaucGCCGCGCUGCg -3'
miRNA:   3'- cacguCGUCGGCC--AGU-----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 21189 0.66 0.335675
Target:  5'- -cGCGGCcugcuGCUGGUCug-CGCGuuGCu -3'
miRNA:   3'- caCGUCGu----CGGCCAGuugGCGCggCG- -5'
26542 5' -60.5 NC_005357.1 + 11174 0.66 0.343799
Target:  5'- uUGCGuGC-GCUGGUCGGCCGUGgUGa -3'
miRNA:   3'- cACGU-CGuCGGCCAGUUGGCGCgGCg -5'
26542 5' -60.5 NC_005357.1 + 2430 0.66 0.343799
Target:  5'- -gGCAGCAgGCCGGccUCGAagauCgGCGCCa- -3'
miRNA:   3'- caCGUCGU-CGGCC--AGUU----GgCGCGGcg -5'
26542 5' -60.5 NC_005357.1 + 29334 0.66 0.343799
Target:  5'- -gGCGGUcGCCGGccaaguccUCGAaccaCGCGCCGg -3'
miRNA:   3'- caCGUCGuCGGCC--------AGUUg---GCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 31291 0.71 0.163345
Target:  5'- -gGCAGCgaAGCCuGG-CGACCGCGUgGUg -3'
miRNA:   3'- caCGUCG--UCGG-CCaGUUGGCGCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 11133 0.68 0.249164
Target:  5'- cGUGCgAGCAGuUCGGcCugcuGCUGgGCCGCc -3'
miRNA:   3'- -CACG-UCGUC-GGCCaGu---UGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2235 0.68 0.249164
Target:  5'- -cGCAGCAGgCGGcgCGugGCCGCGCa-- -3'
miRNA:   3'- caCGUCGUCgGCCa-GU--UGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 13634 0.66 0.352064
Target:  5'- -aGCGGCAGCaaGUCcGgCGCgGCCGUc -3'
miRNA:   3'- caCGUCGUCGgcCAGuUgGCG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 24301 0.66 0.352064
Target:  5'- -gGgGGCGGUgaGGUCGGCgaGCaGCCGCg -3'
miRNA:   3'- caCgUCGUCGg-CCAGUUGg-CG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28656 0.66 0.343799
Target:  5'- aGUGCcagaucGguGCCGG-CGGCCuCGCCaGCg -3'
miRNA:   3'- -CACGu-----CguCGGCCaGUUGGcGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 15246 0.68 0.249164
Target:  5'- --aCGGCAGagGGUCGGCC-UGCCGCa -3'
miRNA:   3'- cacGUCGUCggCCAGUUGGcGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.