miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 14219 0.67 0.319851
Target:  5'- -cGCAGCgcggcuuccuuGGCgCGGUUAAgUGCGUCGUc -3'
miRNA:   3'- caCGUCG-----------UCG-GCCAGUUgGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28837 0.67 0.319851
Target:  5'- -gGUuGCGGCCGGaCuuGCCgaagcugucccaGCGCCGCg -3'
miRNA:   3'- caCGuCGUCGGCCaGu-UGG------------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 3805 0.67 0.319851
Target:  5'- -gGCAGCaugaccAGgCGGUCGGggGCGCCGUu -3'
miRNA:   3'- caCGUCG------UCgGCCAGUUggCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 8620 0.67 0.319851
Target:  5'- -gGC-GUGGCCGGuacgcccuUCGgaaacgccccagGCCGCGCCGUa -3'
miRNA:   3'- caCGuCGUCGGCC--------AGU------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 33624 0.67 0.319851
Target:  5'- -aGCAGaucgguacugacCGGCgCGGcCGACCcaucguGCGCCGCg -3'
miRNA:   3'- caCGUC------------GUCG-GCCaGUUGG------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 31612 0.67 0.319851
Target:  5'- ------gAGCCGGaaggauUCAGCCGCGCCGa -3'
miRNA:   3'- cacgucgUCGGCC------AGUUGGCGCGGCg -5'
26542 5' -60.5 NC_005357.1 + 5441 0.67 0.312151
Target:  5'- -gGCGGCgugggcgaGGUCGGuaUCGACCaucaCGCCGCg -3'
miRNA:   3'- caCGUCG--------UCGGCC--AGUUGGc---GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 1046 0.67 0.312151
Target:  5'- -gGCGGCAGCauGUCG-CCGCGaaCCGg -3'
miRNA:   3'- caCGUCGUCGgcCAGUuGGCGC--GGCg -5'
26542 5' -60.5 NC_005357.1 + 33654 0.67 0.312151
Target:  5'- cGUGgAGguGUCGGaauGACCGCG-CGCa -3'
miRNA:   3'- -CACgUCguCGGCCag-UUGGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 25748 0.67 0.304592
Target:  5'- -gGCAGCAcGCUGGg----CGCGCUGCu -3'
miRNA:   3'- caCGUCGU-CGGCCaguugGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4368 0.67 0.304592
Target:  5'- -gGaCGGCAGgCGGaugcgCAGCCagGCGCCGUc -3'
miRNA:   3'- caC-GUCGUCgGCCa----GUUGG--CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 28627 0.67 0.289899
Target:  5'- -cGCGGaugaGGCCGGcCAGuuCCGCG-CGCa -3'
miRNA:   3'- caCGUCg---UCGGCCaGUU--GGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 27506 0.67 0.289899
Target:  5'- -cGCAGUcggcacuugaGGCCGGcCAGCagcagauCGCCGCg -3'
miRNA:   3'- caCGUCG----------UCGGCCaGUUGgc-----GCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 2828 0.67 0.289899
Target:  5'- gGUGCucGCGGCCacgcgCAGCgGCGCCaGCa -3'
miRNA:   3'- -CACGu-CGUCGGcca--GUUGgCGCGG-CG- -5'
26542 5' -60.5 NC_005357.1 + 13801 0.67 0.289899
Target:  5'- -cGCGGaacuGGCCGGccUCAuCCGCGCC-Cg -3'
miRNA:   3'- caCGUCg---UCGGCC--AGUuGGCGCGGcG- -5'
26542 5' -60.5 NC_005357.1 + 20307 0.67 0.289899
Target:  5'- uUGCucGGCGGCCGGUUgcgAugCGgGCUGg -3'
miRNA:   3'- cACG--UCGUCGGCCAG---UugGCgCGGCg -5'
26542 5' -60.5 NC_005357.1 + 19483 0.67 0.289899
Target:  5'- -cGcCAGguGCCGGUgGGCagGCcGCUGCg -3'
miRNA:   3'- caC-GUCguCGGCCAgUUGg-CG-CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 17867 0.68 0.282763
Target:  5'- ----cGUGGCCGGccUCGccaucGCCGCGCUGCg -3'
miRNA:   3'- cacguCGUCGGCC--AGU-----UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 5117 0.68 0.282763
Target:  5'- gGUGCGGCuggcGCCGuUgAACUGCaacguGCCGCg -3'
miRNA:   3'- -CACGUCGu---CGGCcAgUUGGCG-----CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 29870 0.68 0.282763
Target:  5'- -cGCAGCgcgaGGCCGG-CAagaaauucACCGaCGCCGa -3'
miRNA:   3'- caCGUCG----UCGGCCaGU--------UGGC-GCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.