miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26543 3' -53.9 NC_005357.1 + 37800 0.68 0.540958
Target:  5'- -cGCAGCGUgg---CCCAGCaucCCCg -3'
miRNA:   3'- guCGUCGCAauaaaGGGUCGgacGGG- -5'
26543 3' -53.9 NC_005357.1 + 12306 0.69 0.529872
Target:  5'- cCGGCGGCGUg--UUCUggcgCGGCCUcaucGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaAAGG----GUCGGA----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 12279 0.69 0.51887
Target:  5'- gGGCGG-GUUGcuggCCCAGCgUGCCg -3'
miRNA:   3'- gUCGUCgCAAUaaa-GGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 31921 0.69 0.507959
Target:  5'- -uGCGGCGU---UUCgaGGCCUGCUCg -3'
miRNA:   3'- guCGUCGCAauaAAGggUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 6328 0.69 0.48644
Target:  5'- gCGGC-GCGUUccgcCCCAGCCaaagcGCCCg -3'
miRNA:   3'- -GUCGuCGCAAuaaaGGGUCGGa----CGGG- -5'
26543 3' -53.9 NC_005357.1 + 687 0.7 0.434667
Target:  5'- aCGGCGGCGccgg--CCgGGCC-GCCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 26902 0.71 0.414867
Target:  5'- cCGGCAcCGUgcaua-UCGGCCUGCCCa -3'
miRNA:   3'- -GUCGUcGCAauaaagGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 18422 0.71 0.405176
Target:  5'- aGGUGGCGUUGUccgCCgAGuCCUGCaCCg -3'
miRNA:   3'- gUCGUCGCAAUAaa-GGgUC-GGACG-GG- -5'
26543 3' -53.9 NC_005357.1 + 19854 0.72 0.358929
Target:  5'- uCAGCAGCGUgGUgagUUCgGGCgUGCCg -3'
miRNA:   3'- -GUCGUCGCAaUAa--AGGgUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 16681 0.73 0.316502
Target:  5'- cCAGCAGCGcg----CCCAGCgUGCUg -3'
miRNA:   3'- -GUCGUCGCaauaaaGGGUCGgACGGg -5'
26543 3' -53.9 NC_005357.1 + 40944 0.73 0.300621
Target:  5'- cCAGCAcuGCGaUAc--CCCGGCCUGCCa -3'
miRNA:   3'- -GUCGU--CGCaAUaaaGGGUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 8130 0.73 0.300621
Target:  5'- uCGGCGGUGac--UUCCCAGCCcuUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaAAGGGUCGG--ACGGg -5'
26543 3' -53.9 NC_005357.1 + 7937 0.73 0.285363
Target:  5'- cCGGC-GCGaggAUUUCCgaCAGCUUGCCCg -3'
miRNA:   3'- -GUCGuCGCaa-UAAAGG--GUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 34151 0.74 0.256694
Target:  5'- cCGGCAGCGUgg---CCCuggaAGCCgaaUGCCCg -3'
miRNA:   3'- -GUCGUCGCAauaaaGGG----UCGG---ACGGG- -5'
26543 3' -53.9 NC_005357.1 + 4127 0.75 0.217565
Target:  5'- -uGCAGCGUUGcUUCCCggcgcauaguggaAGCC-GCCCa -3'
miRNA:   3'- guCGUCGCAAUaAAGGG-------------UCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 3009 1.12 0.000551
Target:  5'- gCAGCAGCGUUAUUUCCCAGCCUGCCCu -3'
miRNA:   3'- -GUCGUCGCAAUAAAGGGUCGGACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.