miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26545 3' -58.9 NC_005357.1 + 2437 0.66 0.492719
Target:  5'- gGCCGGCCucgaagauCGGc-GCCACGaUGUUGc -3'
miRNA:   3'- gCGGCCGGu-------GCCuaUGGUGCgACAGC- -5'
26545 3' -58.9 NC_005357.1 + 10785 0.66 0.492719
Target:  5'- -uUCGGCCugGGAUugCAuguacUGCUGcgccUCGg -3'
miRNA:   3'- gcGGCCGGugCCUAugGU-----GCGAC----AGC- -5'
26545 3' -58.9 NC_005357.1 + 3739 0.66 0.492719
Target:  5'- aCGCCGGUggugggCACGucGGUGCCGcCGCUGg-- -3'
miRNA:   3'- -GCGGCCG------GUGC--CUAUGGU-GCGACagc -5'
26545 3' -58.9 NC_005357.1 + 26365 0.66 0.492719
Target:  5'- gCGCC-GCgCGCGGcgGCCACGUgcgCGa -3'
miRNA:   3'- -GCGGcCG-GUGCCuaUGGUGCGacaGC- -5'
26545 3' -58.9 NC_005357.1 + 5266 0.66 0.482605
Target:  5'- -aCCGGCCACcguguuGAUguucGCgGCGUUGUCGg -3'
miRNA:   3'- gcGGCCGGUGc-----CUA----UGgUGCGACAGC- -5'
26545 3' -58.9 NC_005357.1 + 8191 0.66 0.482605
Target:  5'- uGCCGGCgauuucaucgcgCACGGccucGUAgUCGCGCUGgUCGg -3'
miRNA:   3'- gCGGCCG------------GUGCC----UAU-GGUGCGAC-AGC- -5'
26545 3' -58.9 NC_005357.1 + 40962 0.66 0.482605
Target:  5'- gGCCuGCCA-GGAggccgccgACCGCGCcGUCa -3'
miRNA:   3'- gCGGcCGGUgCCUa-------UGGUGCGaCAGc -5'
26545 3' -58.9 NC_005357.1 + 150 0.66 0.472592
Target:  5'- gCGCCaGGCUuccccgcagGCGGAUgcGCCcCGgUGUCGc -3'
miRNA:   3'- -GCGG-CCGG---------UGCCUA--UGGuGCgACAGC- -5'
26545 3' -58.9 NC_005357.1 + 22266 0.66 0.472592
Target:  5'- uCGCCGGCCgucagcgaAUGGugauagACCACgGC-GUCGa -3'
miRNA:   3'- -GCGGCCGG--------UGCCua----UGGUG-CGaCAGC- -5'
26545 3' -58.9 NC_005357.1 + 42198 0.66 0.472592
Target:  5'- cCGCCGGCCcuacaacauGCGGcAUACCuacgccaccaugAUGCUGauggCGg -3'
miRNA:   3'- -GCGGCCGG---------UGCC-UAUGG------------UGCGACa---GC- -5'
26545 3' -58.9 NC_005357.1 + 15572 0.66 0.471596
Target:  5'- gCGCCGucagugacgacgcGCUGCGGAUgcACCGCGCcaUCGg -3'
miRNA:   3'- -GCGGC-------------CGGUGCCUA--UGGUGCGacAGC- -5'
26545 3' -58.9 NC_005357.1 + 5212 0.66 0.462685
Target:  5'- uGCUGGCCugcaacCGGAUACCcagcaguucGCGCaGuUCGg -3'
miRNA:   3'- gCGGCCGGu-----GCCUAUGG---------UGCGaC-AGC- -5'
26545 3' -58.9 NC_005357.1 + 4800 0.66 0.462685
Target:  5'- aCGCCGGCUggcgcuGCgGGAUugCugGCcggcgacagGUCGc -3'
miRNA:   3'- -GCGGCCGG------UG-CCUAugGugCGa--------CAGC- -5'
26545 3' -58.9 NC_005357.1 + 33206 0.66 0.452889
Target:  5'- cCGCUGGCUaucGCGGcacgGCCAcCGCUGgcuaucgCGg -3'
miRNA:   3'- -GCGGCCGG---UGCCua--UGGU-GCGACa------GC- -5'
26545 3' -58.9 NC_005357.1 + 33254 0.66 0.452889
Target:  5'- cCGCUGGCUaucGCGGcacgGCCAcCGCUGgcuaucgCGg -3'
miRNA:   3'- -GCGGCCGG---UGCCua--UGGU-GCGACa------GC- -5'
26545 3' -58.9 NC_005357.1 + 33302 0.66 0.452889
Target:  5'- cCGCUGGCUaucGCGGcacgGCCAcCGCUGgcuaucgCGg -3'
miRNA:   3'- -GCGGCCGG---UGCCua--UGGU-GCGACa------GC- -5'
26545 3' -58.9 NC_005357.1 + 33350 0.66 0.452889
Target:  5'- cCGCUGGCUaucGCGGcacgGCCAcCGCUGgcuaucgCGg -3'
miRNA:   3'- -GCGGCCGG---UGCCua--UGGU-GCGACa------GC- -5'
26545 3' -58.9 NC_005357.1 + 1964 0.66 0.452889
Target:  5'- gCGCgCGGcCCugGGGgaaGgCACGCUGUa- -3'
miRNA:   3'- -GCG-GCC-GGugCCUa--UgGUGCGACAgc -5'
26545 3' -58.9 NC_005357.1 + 28792 0.66 0.443206
Target:  5'- gGaCGGCCGCgccGGAcuugcugccgcUACCgAUGCUGUCGg -3'
miRNA:   3'- gCgGCCGGUG---CCU-----------AUGG-UGCGACAGC- -5'
26545 3' -58.9 NC_005357.1 + 32552 0.66 0.442244
Target:  5'- gCGCCuGGCCGagaagcagcgcgcCGG-UGCCACGCUcaUCGa -3'
miRNA:   3'- -GCGG-CCGGU-------------GCCuAUGGUGCGAc-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.