miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26545 5' -54.7 NC_005357.1 + 21104 0.68 0.554224
Target:  5'- cGCGGUGGCCGGCAucaagcccgaagUGCUCGACAaGUu -3'
miRNA:   3'- cCGCUGUCGGUUGU------------ACGAGCUGUcCA- -5'
26545 5' -54.7 NC_005357.1 + 31331 0.68 0.543192
Target:  5'- uGGCcGCAGCCGACAaggUGCUCGcGCGc-- -3'
miRNA:   3'- -CCGcUGUCGGUUGU---ACGAGC-UGUcca -5'
26545 5' -54.7 NC_005357.1 + 21806 0.68 0.543192
Target:  5'- uGGCgGACA-CCGGCAguUGCagCGGCGGGUu -3'
miRNA:   3'- -CCG-CUGUcGGUUGU--ACGa-GCUGUCCA- -5'
26545 5' -54.7 NC_005357.1 + 24456 0.68 0.542092
Target:  5'- cGGCGACAuugacGCCGACGaccugcUGCUUGGCcugcgccAGGa -3'
miRNA:   3'- -CCGCUGU-----CGGUUGU------ACGAGCUG-------UCCa -5'
26545 5' -54.7 NC_005357.1 + 9208 0.68 0.542092
Target:  5'- cGCGAUAGCCAGCgguggccGUGCcgCGAUAGc- -3'
miRNA:   3'- cCGCUGUCGGUUG-------UACGa-GCUGUCca -5'
26545 5' -54.7 NC_005357.1 + 9160 0.68 0.542092
Target:  5'- cGCGAUAGCCAGCgguggccGUGCcgCGAUAGc- -3'
miRNA:   3'- cCGCUGUCGGUUG-------UACGa-GCUGUCca -5'
26545 5' -54.7 NC_005357.1 + 9112 0.68 0.542092
Target:  5'- cGCGAUAGCCAGCgguggccGUGCcgCGAUAGc- -3'
miRNA:   3'- cCGCUGUCGGUUG-------UACGa-GCUGUCca -5'
26545 5' -54.7 NC_005357.1 + 9064 0.68 0.542092
Target:  5'- cGCGAUAGCCAGCgguggccGUGCcgCGAUAGc- -3'
miRNA:   3'- cCGCUGUCGGUUG-------UACGa-GCUGUCca -5'
26545 5' -54.7 NC_005357.1 + 9016 0.68 0.542092
Target:  5'- cGCGAUAGCCAGCgguggccGUGCcgCGAUAGc- -3'
miRNA:   3'- cCGCUGUCGGUUG-------UACGa-GCUGUCca -5'
26545 5' -54.7 NC_005357.1 + 41389 0.68 0.540994
Target:  5'- cGGCGACAugcugccGCCGGCcguggccuuccagGUGUUCGACGcugcGGUg -3'
miRNA:   3'- -CCGCUGU-------CGGUUG-------------UACGAGCUGU----CCA- -5'
26545 5' -54.7 NC_005357.1 + 26373 0.68 0.532232
Target:  5'- cGCGGCGGCC-ACGUGCgCGAacuGGc -3'
miRNA:   3'- cCGCUGUCGGuUGUACGaGCUgu-CCa -5'
26545 5' -54.7 NC_005357.1 + 24157 0.68 0.532232
Target:  5'- cGCuGACGGCCGGCAaguuCUCGgcGCAGGUc -3'
miRNA:   3'- cCG-CUGUCGGUUGUac--GAGC--UGUCCA- -5'
26545 5' -54.7 NC_005357.1 + 36902 0.69 0.499866
Target:  5'- gGGCGgaaccuggGCGGCCGGCGUGCcuaCGACuuuGGc -3'
miRNA:   3'- -CCGC--------UGUCGGUUGUACGa--GCUGu--CCa -5'
26545 5' -54.7 NC_005357.1 + 28897 0.69 0.489269
Target:  5'- --aGGCGGCCGACA-GUUCGGCGcGGa -3'
miRNA:   3'- ccgCUGUCGGUUGUaCGAGCUGU-CCa -5'
26545 5' -54.7 NC_005357.1 + 4381 0.69 0.478779
Target:  5'- aGGCGACGGCCGACuUG-UCGGCc--- -3'
miRNA:   3'- -CCGCUGUCGGUUGuACgAGCUGucca -5'
26545 5' -54.7 NC_005357.1 + 8035 0.69 0.468401
Target:  5'- cGGUGACAGCCucGACGcucaaccgcUGCUCGACc--- -3'
miRNA:   3'- -CCGCUGUCGG--UUGU---------ACGAGCUGucca -5'
26545 5' -54.7 NC_005357.1 + 21157 0.69 0.458139
Target:  5'- gGGcCGACAcuuacGCCGACAUGCUgGGCAu-- -3'
miRNA:   3'- -CC-GCUGU-----CGGUUGUACGAgCUGUcca -5'
26545 5' -54.7 NC_005357.1 + 730 0.7 0.447999
Target:  5'- gGGCGGCuuuGCCGACAacGC-CGGcCAGGUc -3'
miRNA:   3'- -CCGCUGu--CGGUUGUa-CGaGCU-GUCCA- -5'
26545 5' -54.7 NC_005357.1 + 14406 0.7 0.437984
Target:  5'- cGGCGAC-GCCGACAUGaUCGGCu--- -3'
miRNA:   3'- -CCGCUGuCGGUUGUACgAGCUGucca -5'
26545 5' -54.7 NC_005357.1 + 13972 0.7 0.437984
Target:  5'- cGCGACGGCCucauguACGUGCcggaaaUCGACGGc- -3'
miRNA:   3'- cCGCUGUCGGu-----UGUACG------AGCUGUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.