miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26546 5' -51.4 NC_005357.1 + 37607 0.66 0.888319
Target:  5'- uCGACGACggCGCCGGccccgaccucuacaaGcUGGccuACGCCa -3'
miRNA:   3'- -GCUGCUGaaGCGGCCa--------------CaACU---UGUGG- -5'
26546 5' -51.4 NC_005357.1 + 37730 0.66 0.879854
Target:  5'- aCGAgGGCggCGUCGGUGccuuucuCACCg -3'
miRNA:   3'- -GCUgCUGaaGCGGCCACaacuu--GUGG- -5'
26546 5' -51.4 NC_005357.1 + 39573 0.66 0.879854
Target:  5'- uCGAaccaGGCcccUCGCUGGUGcUG-GCGCCg -3'
miRNA:   3'- -GCUg---CUGa--AGCGGCCACaACuUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 16595 0.66 0.871875
Target:  5'- aGGcCGACcaCGCgaUGGUGUUG-GCGCCg -3'
miRNA:   3'- gCU-GCUGaaGCG--GCCACAACuUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 18389 0.66 0.871875
Target:  5'- uGcCGAUggCGCCGGUGgcGGcCACg -3'
miRNA:   3'- gCuGCUGaaGCGGCCACaaCUuGUGg -5'
26546 5' -51.4 NC_005357.1 + 22137 0.66 0.871875
Target:  5'- uCGAacaGGCUUUGCaCGGUGgUGcuGCACUu -3'
miRNA:   3'- -GCUg--CUGAAGCG-GCCACaACu-UGUGG- -5'
26546 5' -51.4 NC_005357.1 + 14617 0.66 0.871875
Target:  5'- gCGuCGGCUUccaugcuuccggCGCCGGUGcgcagaUUGAuaccuuGCACCu -3'
miRNA:   3'- -GCuGCUGAA------------GCGGCCAC------AACU------UGUGG- -5'
26546 5' -51.4 NC_005357.1 + 16716 0.66 0.871875
Target:  5'- aCGACGACccCGCCGcGgggcugGUaUGAGCAgCg -3'
miRNA:   3'- -GCUGCUGaaGCGGC-Ca-----CA-ACUUGUgG- -5'
26546 5' -51.4 NC_005357.1 + 4487 0.66 0.863632
Target:  5'- aCGACGAaacCGCCGGaUGcgcgcGGCGCCa -3'
miRNA:   3'- -GCUGCUgaaGCGGCC-ACaac--UUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 36399 0.66 0.863632
Target:  5'- cCGuuCGACUUCaa-GGUGUUcAACACCg -3'
miRNA:   3'- -GCu-GCUGAAGcggCCACAAcUUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 35777 0.66 0.863632
Target:  5'- aCGACGGCUUCcCCGGcaaccUGUacgUGuccgcgcgcAGCGCCa -3'
miRNA:   3'- -GCUGCUGAAGcGGCC-----ACA---AC---------UUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 27626 0.66 0.863632
Target:  5'- uGACGAUgg-GCCGGUgGUUGGucgGCAUg -3'
miRNA:   3'- gCUGCUGaagCGGCCA-CAACU---UGUGg -5'
26546 5' -51.4 NC_005357.1 + 10131 0.66 0.855994
Target:  5'- gCGGCGAUgaggucgcgcaacgCGCUGGUGUuuuccUGGAUugCu -3'
miRNA:   3'- -GCUGCUGaa------------GCGGCCACA-----ACUUGugG- -5'
26546 5' -51.4 NC_005357.1 + 13095 0.66 0.855133
Target:  5'- uCGAgGACUUgGCCGGc---GAcCGCCa -3'
miRNA:   3'- -GCUgCUGAAgCGGCCacaaCUuGUGG- -5'
26546 5' -51.4 NC_005357.1 + 2208 0.66 0.855133
Target:  5'- cCGACGcCcUCGUCGG-GU--AGCACCa -3'
miRNA:   3'- -GCUGCuGaAGCGGCCaCAacUUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 14852 0.66 0.855133
Target:  5'- uGGCGGCcagCGCCGcacGcUGGGCGCCu -3'
miRNA:   3'- gCUGCUGaa-GCGGCca-CaACUUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 37647 0.66 0.855133
Target:  5'- cCGGCGuGCUgggCGCa-GUGUgggcGAACGCCg -3'
miRNA:   3'- -GCUGC-UGAa--GCGgcCACAa---CUUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 14032 0.66 0.855133
Target:  5'- uGGCGccGCgcCGCCGGcGUcgaacugGAACACCu -3'
miRNA:   3'- gCUGC--UGaaGCGGCCaCAa------CUUGUGG- -5'
26546 5' -51.4 NC_005357.1 + 20182 0.66 0.852535
Target:  5'- -uGCGGCUUCGCCuugucgucgcccucGGUcUUGGcaGCGCCc -3'
miRNA:   3'- gcUGCUGAAGCGG--------------CCAcAACU--UGUGG- -5'
26546 5' -51.4 NC_005357.1 + 23413 0.67 0.846386
Target:  5'- uGAUGAgcgCGCCGGUcagUGcGACGCCg -3'
miRNA:   3'- gCUGCUgaaGCGGCCAca-AC-UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.