miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26547 5' -58.8 NC_005357.1 + 30217 0.66 0.463514
Target:  5'- gCUGCgUCCcgaCCAGGGGc-AGGCagcGCGGGc -3'
miRNA:   3'- -GAUGaAGG---GGUCCCCacUCCG---UGCCC- -5'
26547 5' -58.8 NC_005357.1 + 7665 0.66 0.453674
Target:  5'- uUGCUUCUcaCCGGGGGccAGGUcguCGGGc -3'
miRNA:   3'- gAUGAAGG--GGUCCCCacUCCGu--GCCC- -5'
26547 5' -58.8 NC_005357.1 + 19183 0.67 0.434342
Target:  5'- aUGCUguUCCCCAGc---GAGGCGCGGu -3'
miRNA:   3'- gAUGA--AGGGGUCcccaCUCCGUGCCc -5'
26547 5' -58.8 NC_005357.1 + 256 0.71 0.220106
Target:  5'- -aGCgaaUCCCCAGGcGcuUGAGGCACGGc -3'
miRNA:   3'- gaUGa--AGGGGUCCcC--ACUCCGUGCCc -5'
26547 5' -58.8 NC_005357.1 + 36310 0.76 0.106604
Target:  5'- aUGCUUCCCCAGGGGUuuuuaccauguccGuccaaagcacagaucGGGuCGCGGGg -3'
miRNA:   3'- gAUGAAGGGGUCCCCA-------------C---------------UCC-GUGCCC- -5'
26547 5' -58.8 NC_005357.1 + 6149 1.09 0.000346
Target:  5'- gCUACUUCCCCAGGGGUGAGGCACGGGc -3'
miRNA:   3'- -GAUGAAGGGGUCCCCACUCCGUGCCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.