miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26549 5' -60.2 NC_005357.1 + 14537 0.67 0.351438
Target:  5'- uCCgCGACGUGCUGggcgagcACGCCaagaUGgcgaGCGCGGa -3'
miRNA:   3'- -GG-GCUGCGCGAC-------UGCGGg---AC----UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 8168 0.67 0.344109
Target:  5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3'
miRNA:   3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 14158 0.67 0.336095
Target:  5'- uCCCaGCGCGCggucaugGuGCGCaacauggugagCCUGGCGCAGu -3'
miRNA:   3'- -GGGcUGCGCGa------C-UGCG-----------GGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 22714 0.67 0.336095
Target:  5'- -gCGAUGCGC-GGCGCCUcuAUGCAGc -3'
miRNA:   3'- ggGCUGCGCGaCUGCGGGacUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 30838 0.68 0.328218
Target:  5'- gCCCGGCGgccaGCcGGCgGCCCUGG-GCGGc -3'
miRNA:   3'- -GGGCUGCg---CGaCUG-CGGGACUgCGUC- -5'
26549 5' -60.2 NC_005357.1 + 42020 0.68 0.328218
Target:  5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3'
miRNA:   3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5'
26549 5' -60.2 NC_005357.1 + 9485 0.68 0.323558
Target:  5'- aUCGACGCaGCcgUGGuCGCCCUGGCcgaacagccagccguGCAGg -3'
miRNA:   3'- gGGCUGCG-CG--ACU-GCGGGACUG---------------CGUC- -5'
26549 5' -60.2 NC_005357.1 + 16114 0.68 0.320479
Target:  5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3'
miRNA:   3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 30881 0.68 0.320479
Target:  5'- aCCGGCGgGCaguccuaucagGAUGCCCgcuCGCAGg -3'
miRNA:   3'- gGGCUGCgCGa----------CUGCGGGacuGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37759 0.68 0.320479
Target:  5'- aUCCGGCGCGCUGGUGCCC--GC-CAa -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGacUGcGUc -5'
26549 5' -60.2 NC_005357.1 + 38920 0.68 0.312877
Target:  5'- cUCCGGguucuCGCGCUG-CGCUCUGGuacaGCGGg -3'
miRNA:   3'- -GGGCU-----GCGCGACuGCGGGACUg---CGUC- -5'
26549 5' -60.2 NC_005357.1 + 4498 0.68 0.312877
Target:  5'- gCCgGAUGCGCgcGGCGCCaCaGGCGCu- -3'
miRNA:   3'- -GGgCUGCGCGa-CUGCGG-GaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 5113 0.68 0.310623
Target:  5'- gUCCGGUGCgGCUGGCGCCgUUGaacugcaacgugccGCGCAGg -3'
miRNA:   3'- -GGGCUGCG-CGACUGCGG-GAC--------------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 24328 0.68 0.305412
Target:  5'- -aCGGCGCGaaGGCGUCCUGGuuCGCGc -3'
miRNA:   3'- ggGCUGCGCgaCUGCGGGACU--GCGUc -5'
26549 5' -60.2 NC_005357.1 + 13176 0.68 0.305412
Target:  5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3'
miRNA:   3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5'
26549 5' -60.2 NC_005357.1 + 36625 0.68 0.304673
Target:  5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3'
miRNA:   3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 14971 0.68 0.3032
Target:  5'- -gCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3'
miRNA:   3'- ggGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37982 0.68 0.29736
Target:  5'- -aUGACGgugccacCGCUGGCGgcuuccCCCUGGCGCGGc -3'
miRNA:   3'- ggGCUGC-------GCGACUGC------GGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 34496 0.69 0.283841
Target:  5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3'
miRNA:   3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 36194 0.69 0.270141
Target:  5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3'
miRNA:   3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.