miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2655 3' -51 NC_001491.2 + 125168 0.66 0.993039
Target:  5'- -aAAGAUGCC--GAUGAAGAccaaaaagucGGCgCCg -3'
miRNA:   3'- ggUUCUACGGagCUACUUCU----------UCGgGG- -5'
2655 3' -51 NC_001491.2 + 32450 0.66 0.990821
Target:  5'- uCCcAGccGCC-CGG-GAGGAGGCCUCc -3'
miRNA:   3'- -GGuUCuaCGGaGCUaCUUCUUCGGGG- -5'
2655 3' -51 NC_001491.2 + 32523 0.66 0.990821
Target:  5'- gCCAAucugGCCaaGAcgcUGGAGAGGCCCg -3'
miRNA:   3'- -GGUUcua-CGGagCU---ACUUCUUCGGGg -5'
2655 3' -51 NC_001491.2 + 25129 0.67 0.989521
Target:  5'- gCCGGGGggGCCgccaacuccagCGgcGAGGAGGCgCCg -3'
miRNA:   3'- -GGUUCUa-CGGa----------GCuaCUUCUUCGgGG- -5'
2655 3' -51 NC_001491.2 + 3990 0.67 0.989521
Target:  5'- aCCAGGcgGCCgCGuGUGGcaGGGCCCa -3'
miRNA:   3'- -GGUUCuaCGGaGC-UACUucUUCGGGg -5'
2655 3' -51 NC_001491.2 + 32689 0.67 0.988081
Target:  5'- cCCAGGcaccgGCC-----GAGGAGGCCCCg -3'
miRNA:   3'- -GGUUCua---CGGagcuaCUUCUUCGGGG- -5'
2655 3' -51 NC_001491.2 + 33244 0.67 0.986493
Target:  5'- gCCAcacgcGGccGCCUCGGUGGccauGAGCCgCCg -3'
miRNA:   3'- -GGU-----UCuaCGGAGCUACUuc--UUCGG-GG- -5'
2655 3' -51 NC_001491.2 + 5586 0.67 0.984748
Target:  5'- gCCgAAGucguUGCuCUCGAUGAagucguAGAGGUCCg -3'
miRNA:   3'- -GG-UUCu---ACG-GAGCUACU------UCUUCGGGg -5'
2655 3' -51 NC_001491.2 + 72610 0.68 0.976013
Target:  5'- cCCAGuGGUGCCUCccac-GGAGGCaCCCc -3'
miRNA:   3'- -GGUU-CUACGGAGcuacuUCUUCG-GGG- -5'
2655 3' -51 NC_001491.2 + 32939 0.69 0.956771
Target:  5'- cCCGAGAUaguccuggccGCCUCGcgcuacgccGAGGcgcAGGCCCCa -3'
miRNA:   3'- -GGUUCUA----------CGGAGCua-------CUUC---UUCGGGG- -5'
2655 3' -51 NC_001491.2 + 59161 0.69 0.95109
Target:  5'- uCCAGGugagcucuaaacGCCUCGcgGuGGuGAGCCCCg -3'
miRNA:   3'- -GGUUCua----------CGGAGCuaCuUC-UUCGGGG- -5'
2655 3' -51 NC_001491.2 + 11947 0.7 0.929012
Target:  5'- aCCucgcuGGGUGCgaCGggGAAGuAGCCCUg -3'
miRNA:   3'- -GGu----UCUACGgaGCuaCUUCuUCGGGG- -5'
2655 3' -51 NC_001491.2 + 120029 0.71 0.917748
Target:  5'- gUCAGGAgUGCUguaAUGAccGGAAGCCCCu -3'
miRNA:   3'- -GGUUCU-ACGGagcUACU--UCUUCGGGG- -5'
2655 3' -51 NC_001491.2 + 147404 0.71 0.905475
Target:  5'- aUAAGc-GCCUCGGgcgUGAAGAcgcagcuuuuuAGCCCCg -3'
miRNA:   3'- gGUUCuaCGGAGCU---ACUUCU-----------UCGGGG- -5'
2655 3' -51 NC_001491.2 + 108995 0.71 0.905475
Target:  5'- uCCGAGcgGCUUCGGcuUGAguAGcAGCCUCg -3'
miRNA:   3'- -GGUUCuaCGGAGCU--ACU--UCuUCGGGG- -5'
2655 3' -51 NC_001491.2 + 1453 0.72 0.854902
Target:  5'- gCGGGGaGCCUCGGUGAugggcagcaccAGggGCUCg -3'
miRNA:   3'- gGUUCUaCGGAGCUACU-----------UCuuCGGGg -5'
2655 3' -51 NC_001491.2 + 148503 0.73 0.821182
Target:  5'- aCGGGG-GCCUCGAcgGAAGccGCUCCg -3'
miRNA:   3'- gGUUCUaCGGAGCUa-CUUCuuCGGGG- -5'
2655 3' -51 NC_001491.2 + 89487 0.74 0.765332
Target:  5'- aCCAcaggGGGUGCUgUUGAcaGGAGggGCCCCa -3'
miRNA:   3'- -GGU----UCUACGG-AGCUa-CUUCuuCGGGG- -5'
2655 3' -51 NC_001491.2 + 84742 0.79 0.548133
Target:  5'- gCCAcAGGUGCCa-GccGggGAAGCCCCg -3'
miRNA:   3'- -GGU-UCUACGGagCuaCuuCUUCGGGG- -5'
2655 3' -51 NC_001491.2 + 95116 1.14 0.004703
Target:  5'- uCCAAGAUGCCUCGAUGAAGAAGCCCCc -3'
miRNA:   3'- -GGUUCUACGGAGCUACUUCUUCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.