miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2655 5' -57.5 NC_001491.2 + 85127 0.66 0.877297
Target:  5'- aCGGgGCGGUGggcgugucgggaaaaACACGUGGGacguaaGCCc -3'
miRNA:   3'- cGCUgCGCCACa--------------UGUGCACCCg-----UGGa -5'
2655 5' -57.5 NC_001491.2 + 77359 0.66 0.869421
Target:  5'- aGCGAgGCGucuuUGUGgGCG-GGcGCGCCUg -3'
miRNA:   3'- -CGCUgCGCc---ACAUgUGCaCC-CGUGGA- -5'
2655 5' -57.5 NC_001491.2 + 97009 0.66 0.862045
Target:  5'- cCGGCGuCGGgaggGC-CGUGGGCuACCa -3'
miRNA:   3'- cGCUGC-GCCaca-UGuGCACCCG-UGGa -5'
2655 5' -57.5 NC_001491.2 + 25922 0.67 0.805149
Target:  5'- ---cCGUGGUGUuggaguuUugGUGGGUACCUc -3'
miRNA:   3'- cgcuGCGCCACAu------GugCACCCGUGGA- -5'
2655 5' -57.5 NC_001491.2 + 64797 0.68 0.787415
Target:  5'- -gGACGC-GUGUGCccCGcGGGCACCc -3'
miRNA:   3'- cgCUGCGcCACAUGu-GCaCCCGUGGa -5'
2655 5' -57.5 NC_001491.2 + 29962 0.68 0.778341
Target:  5'- -gGACGUGG-GUGgAagGUGGGUACCg -3'
miRNA:   3'- cgCUGCGCCaCAUgUg-CACCCGUGGa -5'
2655 5' -57.5 NC_001491.2 + 118379 0.68 0.759822
Target:  5'- --aACGCGuUGUAC-CaGUGGGCACCa -3'
miRNA:   3'- cgcUGCGCcACAUGuG-CACCCGUGGa -5'
2655 5' -57.5 NC_001491.2 + 83622 0.69 0.721542
Target:  5'- gGgGACGCGGc---CACGU-GGCACCUa -3'
miRNA:   3'- -CgCUGCGCCacauGUGCAcCCGUGGA- -5'
2655 5' -57.5 NC_001491.2 + 145100 0.69 0.701921
Target:  5'- cGCGACGCGGUG-AUGCGaGGcGaaaACCUc -3'
miRNA:   3'- -CGCUGCGCCACaUGUGCaCC-Cg--UGGA- -5'
2655 5' -57.5 NC_001491.2 + 99062 0.69 0.700933
Target:  5'- cGCGGCGCGGUcUGCGCGaugGaGGCgaggcucGCCg -3'
miRNA:   3'- -CGCUGCGCCAcAUGUGCa--C-CCG-------UGGa -5'
2655 5' -57.5 NC_001491.2 + 132812 0.69 0.692021
Target:  5'- uCGGCGUcGUGUAgGCGUaugcuaccaagGGGCGCCa -3'
miRNA:   3'- cGCUGCGcCACAUgUGCA-----------CCCGUGGa -5'
2655 5' -57.5 NC_001491.2 + 27206 0.7 0.672085
Target:  5'- uGCGcCGCGGUGUccguGCugGUcGGGUauaGCCc -3'
miRNA:   3'- -CGCuGCGCCACA----UGugCA-CCCG---UGGa -5'
2655 5' -57.5 NC_001491.2 + 28533 0.73 0.457023
Target:  5'- cGCGAgGCGGUucACAuCG-GGGCGCCa -3'
miRNA:   3'- -CGCUgCGCCAcaUGU-GCaCCCGUGGa -5'
2655 5' -57.5 NC_001491.2 + 95151 1.09 0.002296
Target:  5'- aGCGACGCGGUGUACACGUGGGCACCUu -3'
miRNA:   3'- -CGCUGCGCCACAUGUGCACCCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.