Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 7611 | 0.66 | 0.302824 |
Target: 5'- cAGCAcGUGGucGCGCagcgCCGGACACguggCCUUg -3' miRNA: 3'- -UCGU-CGCC--CGCG----GGCCUGUGaa--GGAG- -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 41142 | 0.66 | 0.295486 |
Target: 5'- cGCGGCGGuGUGggCGGGCAUcaCCUCg -3' miRNA: 3'- uCGUCGCC-CGCggGCCUGUGaaGGAG- -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 30081 | 0.66 | 0.295486 |
Target: 5'- ---uGUGcGGCGCCCGGGCGCcacggcCCUUg -3' miRNA: 3'- ucguCGC-CCGCGGGCCUGUGaa----GGAG- -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 7544 | 0.66 | 0.287574 |
Target: 5'- cGGCGGCGugcucgauccgcGGCGCCaccggcuUGGACACgUCCa- -3' miRNA: 3'- -UCGUCGC------------CCGCGG-------GCCUGUGaAGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 12346 | 0.66 | 0.279134 |
Target: 5'- gGGCcGU-GGCGCCCGGGCGCcgcacaaaggauauUUCCg- -3' miRNA: 3'- -UCGuCGcCCGCGGGCCUGUG--------------AAGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 38556 | 0.67 | 0.272252 |
Target: 5'- cGGCAGCGcggccuacagcgacGGCGCCUGGuACAaCUUCg-- -3' miRNA: 3'- -UCGUCGC--------------CCGCGGGCC-UGU-GAAGgag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 21878 | 0.67 | 0.267517 |
Target: 5'- gAGCAGCaagcggGGGCGCCgcaucgUGuGGCGCUUUCUg -3' miRNA: 3'- -UCGUCG------CCCGCGG------GC-CUGUGAAGGAg -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 13456 | 0.67 | 0.254353 |
Target: 5'- uGGCGGCcucGGGCGCggugUCGGGCAUgaCCUg -3' miRNA: 3'- -UCGUCG---CCCGCG----GGCCUGUGaaGGAg -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 33177 | 0.67 | 0.254353 |
Target: 5'- uGCggaAGUGGGCGCCCucGGCACggCCa- -3' miRNA: 3'- uCG---UCGCCCGCGGGc-CUGUGaaGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 28592 | 0.67 | 0.247973 |
Target: 5'- cGGCAGCGuGGUG-UCGGuCAgUUCCUUg -3' miRNA: 3'- -UCGUCGC-CCGCgGGCCuGUgAAGGAG- -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 13573 | 0.68 | 0.229626 |
Target: 5'- cGUGGCGcGGCGCUgGGACAgCUUCg-- -3' miRNA: 3'- uCGUCGC-CCGCGGgCCUGU-GAAGgag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 42243 | 0.68 | 0.229626 |
Target: 5'- cGGCAGCGugacGGUGCCCagcgacaccgGGGCGCaUCCg- -3' miRNA: 3'- -UCGUCGC----CCGCGGG----------CCUGUGaAGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 16175 | 0.68 | 0.229626 |
Target: 5'- aGGcCGGCGGGUGCCCGuGC-CUUCg-- -3' miRNA: 3'- -UC-GUCGCCCGCGGGCcUGuGAAGgag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 8172 | 0.68 | 0.22377 |
Target: 5'- uGC-GCGuGCGCCCGGAUGCUgCCg- -3' miRNA: 3'- uCGuCGCcCGCGGGCCUGUGAaGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 15145 | 0.68 | 0.218041 |
Target: 5'- uGGCGGCGGauGCGCCCaGGGCgacgGCUgauguugcUCCUg -3' miRNA: 3'- -UCGUCGCC--CGCGGG-CCUG----UGA--------AGGAg -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 15691 | 0.68 | 0.218041 |
Target: 5'- cGCAGCGGGCGCgcuggCGGugGCccggCUUUg -3' miRNA: 3'- uCGUCGCCCGCGg----GCCugUGaa--GGAG- -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 7381 | 0.69 | 0.201603 |
Target: 5'- cAGCGGCGGGCaCCgCGGcgAC-CUUCCa- -3' miRNA: 3'- -UCGUCGCCCGcGG-GCC--UGuGAAGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 32420 | 0.69 | 0.201603 |
Target: 5'- gGGCGGgggcCGGGCGCgCGG-CACUUUCg- -3' miRNA: 3'- -UCGUC----GCCCGCGgGCCuGUGAAGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 14589 | 0.69 | 0.201603 |
Target: 5'- gAGCAGCGGcGCGgCCGG-CGCcaCCg- -3' miRNA: 3'- -UCGUCGCC-CGCgGGCCuGUGaaGGag -5' |
|||||||
26550 | 5' | -61.8 | NC_005357.1 | + | 34152 | 0.69 | 0.20002 |
Target: 5'- cGGCAGCGuGGCccuggaagccgaauGCCCGGAUgaUUCCa- -3' miRNA: 3'- -UCGUCGC-CCG--------------CGGGCCUGugAAGGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home