Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26551 | 5' | -64.2 | NC_005357.1 | + | 23760 | 0.67 | 0.198961 |
Target: 5'- uGCCGGCG-CCACCgggccgaugCGCCGCg-- -3' miRNA: 3'- gCGGCCGCaGGUGGgaa------GCGGCGggu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 1157 | 0.68 | 0.193927 |
Target: 5'- aCGgCGGCgGUCaCGCCCcacauagucUCGCCGCCgGg -3' miRNA: 3'- -GCgGCCG-CAG-GUGGGa--------AGCGGCGGgU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 8050 | 0.68 | 0.189004 |
Target: 5'- uGCCGcCGUCCaugacgcgcGCCCaggUCGCUGCCUu -3' miRNA: 3'- gCGGCcGCAGG---------UGGGa--AGCGGCGGGu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 3988 | 0.68 | 0.189004 |
Target: 5'- aCGCCaGCagauagauGUCCGCCCaaaacgCGCCGgCCAc -3' miRNA: 3'- -GCGGcCG--------CAGGUGGGaa----GCGGCgGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 30986 | 0.68 | 0.184191 |
Target: 5'- uGCCGGUGUCgCGCCUUaUCGgCGaCCUg -3' miRNA: 3'- gCGGCCGCAG-GUGGGA-AGCgGC-GGGu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 14042 | 0.68 | 0.182768 |
Target: 5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3' miRNA: 3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 29096 | 0.69 | 0.166009 |
Target: 5'- uCGgCGGCGaCCugCCgaaagccuaCGCCGCCUAc -3' miRNA: 3'- -GCgGCCGCaGGugGGaa-------GCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 8625 | 0.69 | 0.153446 |
Target: 5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3' miRNA: 3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 6396 | 0.69 | 0.145556 |
Target: 5'- gGCCGGC--CgGCCCgguguagUCGCgGCCCAu -3' miRNA: 3'- gCGGCCGcaGgUGGGa------AGCGgCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 8184 | 0.7 | 0.134414 |
Target: 5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3' miRNA: 3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 16647 | 0.7 | 0.124062 |
Target: 5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3' miRNA: 3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 7231 | 0.7 | 0.124062 |
Target: 5'- gCGCC-GCGcUCACCCUcggcgaugUCgGCCGCCCAg -3' miRNA: 3'- -GCGGcCGCaGGUGGGA--------AG-CGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 18093 | 0.71 | 0.117577 |
Target: 5'- aGCCGGCGcgaaccaggaCGCCUUcgCGCCGUCCGg -3' miRNA: 3'- gCGGCCGCag--------GUGGGAa-GCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 5528 | 0.71 | 0.108439 |
Target: 5'- aCGCCGGCcgcccagguUCCGCCCaggUCGCcCGCCaCGg -3' miRNA: 3'- -GCGGCCGc--------AGGUGGGa--AGCG-GCGG-GU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 33850 | 0.71 | 0.102722 |
Target: 5'- uCGCCGugaccgucGUGUCgCGCCUgUCGCUGCCCGc -3' miRNA: 3'- -GCGGC--------CGCAG-GUGGGaAGCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 41752 | 0.71 | 0.102722 |
Target: 5'- gGCCGGCG-CCGCCgUagGCgGCCUg -3' miRNA: 3'- gCGGCCGCaGGUGGgAagCGgCGGGu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 693 | 0.71 | 0.099971 |
Target: 5'- gCGCCGGCcgggCCGCCCaagauaCCGCCCAg -3' miRNA: 3'- -GCGGCCGca--GGUGGGaagc--GGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 1503 | 0.72 | 0.097289 |
Target: 5'- uGCUGGuCGgacauggcgCC-CCCUuauUCGCCGCCCAg -3' miRNA: 3'- gCGGCC-GCa--------GGuGGGA---AGCGGCGGGU- -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 7929 | 0.72 | 0.092129 |
Target: 5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3' miRNA: 3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5' |
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26551 | 5' | -64.2 | NC_005357.1 | + | 34532 | 0.73 | 0.078164 |
Target: 5'- aGCUGGCGaUCUACgCacgCGCCGCCCu -3' miRNA: 3'- gCGGCCGC-AGGUGgGaa-GCGGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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