miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26552 3' -53.6 NC_005357.1 + 9824 1.12 0.00062
Target:  5'- aGCGUUUGCGCAUCACGCUGCACCUCGg -3'
miRNA:   3'- -CGCAAACGCGUAGUGCGACGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 3647 0.77 0.191483
Target:  5'- -gGUUUGCGUuuacUCACGCcaGCACCUCGu -3'
miRNA:   3'- cgCAAACGCGu---AGUGCGa-CGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 6622 0.76 0.219673
Target:  5'- aGCGg--GCGCGUgGCGCUGCGCg-CGg -3'
miRNA:   3'- -CGCaaaCGCGUAgUGCGACGUGgaGC- -5'
26552 3' -53.6 NC_005357.1 + 12507 0.75 0.258095
Target:  5'- gGCGUUUuucaugaacaGCGCGUCGaggUGCUGCucgACCUCGg -3'
miRNA:   3'- -CGCAAA----------CGCGUAGU---GCGACG---UGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 8665 0.74 0.301839
Target:  5'- cGCGgucggcaUUGCGUGcCGCGC-GCACCUCGg -3'
miRNA:   3'- -CGCa------AACGCGUaGUGCGaCGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 5619 0.73 0.342491
Target:  5'- uGCGUUUcGCGCGUgGCGCggcGCAgCUUGc -3'
miRNA:   3'- -CGCAAA-CGCGUAgUGCGa--CGUgGAGC- -5'
26552 3' -53.6 NC_005357.1 + 14853 0.72 0.377757
Target:  5'- gGCGgccaGCGCcgCACGCUggGCGCCUUu -3'
miRNA:   3'- -CGCaaa-CGCGuaGUGCGA--CGUGGAGc -5'
26552 3' -53.6 NC_005357.1 + 24142 0.72 0.396284
Target:  5'- cCGgcUGCGCGcCugGCccaGCGCCUCGa -3'
miRNA:   3'- cGCaaACGCGUaGugCGa--CGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 4376 0.72 0.405764
Target:  5'- gGCGgaUGCGCAgccaggcgccgUCGCGCcGgGCCUUGa -3'
miRNA:   3'- -CGCaaACGCGU-----------AGUGCGaCgUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 12135 0.72 0.405764
Target:  5'- cGCGac-GCGCcaCGCGCUGCGCUUCc -3'
miRNA:   3'- -CGCaaaCGCGuaGUGCGACGUGGAGc -5'
26552 3' -53.6 NC_005357.1 + 7028 0.71 0.415385
Target:  5'- gGCGUUUGUGCcgCcUGUUGCagcaggcgcaugGCCUCGg -3'
miRNA:   3'- -CGCAAACGCGuaGuGCGACG------------UGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 9899 0.7 0.465503
Target:  5'- cGCGUg-GCGaUGUCGaGCUGCACUUCGa -3'
miRNA:   3'- -CGCAaaCGC-GUAGUgCGACGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 14639 0.7 0.475901
Target:  5'- uGCGgcUGCGCG--GCGC-GCGCUUCGu -3'
miRNA:   3'- -CGCaaACGCGUagUGCGaCGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 34589 0.7 0.475901
Target:  5'- aGCGcgUGCGCcugGUCAUcgugcaGCcGCGCCUCGa -3'
miRNA:   3'- -CGCaaACGCG---UAGUG------CGaCGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 10497 0.7 0.486414
Target:  5'- -aGUcgUGCGUGUCGaGCaGCGCCUCGa -3'
miRNA:   3'- cgCAa-ACGCGUAGUgCGaCGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 24802 0.69 0.518582
Target:  5'- cGCGUUgaaGUcgccguacaGCAUCugGCUGCGCaauggCUCGg -3'
miRNA:   3'- -CGCAAa--CG---------CGUAGugCGACGUG-----GAGC- -5'
26552 3' -53.6 NC_005357.1 + 35262 0.69 0.518582
Target:  5'- gGCGUcaGCGCGUCGgGCcUGgGCUUCa -3'
miRNA:   3'- -CGCAaaCGCGUAGUgCG-ACgUGGAGc -5'
26552 3' -53.6 NC_005357.1 + 6010 0.69 0.562699
Target:  5'- aGCGUgcGUGCcguUCugGauagGCACCUCGc -3'
miRNA:   3'- -CGCAaaCGCGu--AGugCga--CGUGGAGC- -5'
26552 3' -53.6 NC_005357.1 + 30302 0.68 0.585146
Target:  5'- cGCGUg-GCGCGUCGCGCca-ACCUg- -3'
miRNA:   3'- -CGCAaaCGCGUAGUGCGacgUGGAgc -5'
26552 3' -53.6 NC_005357.1 + 12608 0.68 0.607761
Target:  5'- --aUUUGCGCAUgGCGCcGaCGCgCUCGg -3'
miRNA:   3'- cgcAAACGCGUAgUGCGaC-GUG-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.