Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26552 | 5' | -60.4 | NC_005357.1 | + | 219 | 0.66 | 0.362088 |
Target: 5'- -gCGAacUG-GCGcaccucGGCAUUGGCGCGCUg -3' miRNA: 3'- caGCU--ACuCGCa-----CCGUGGCCGCGCGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 2722 | 0.7 | 0.203445 |
Target: 5'- cGUUGGccggacgcuUGAGCGcGGC-CCGGCGCuGCUc -3' miRNA: 3'- -CAGCU---------ACUCGCaCCGuGGCCGCG-CGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 4178 | 0.67 | 0.30606 |
Target: 5'- gGUCGAgguguagccagUGGGCGccgaaaaguUGGaAUCGGCGCGCa -3' miRNA: 3'- -CAGCU-----------ACUCGC---------ACCgUGGCCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 4666 | 0.68 | 0.270264 |
Target: 5'- gGUUGuUG-GCG-GGCACCaGCGCGCc -3' miRNA: 3'- -CAGCuACuCGCaCCGUGGcCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 5243 | 0.66 | 0.362088 |
Target: 5'- -aCGGUGuugacguuGGCGuUGGCACCGGCcaccGUGUUg -3' miRNA: 3'- caGCUAC--------UCGC-ACCGUGGCCG----CGCGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 6611 | 0.78 | 0.050409 |
Target: 5'- uGUCGAUGAccagcgggcGCGUGGCGCUG-CGCGCg -3' miRNA: 3'- -CAGCUACU---------CGCACCGUGGCcGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 8162 | 0.68 | 0.291321 |
Target: 5'- cUCGAUGAuGCGgcccaggaaGGCGCUGGCGUcCUg -3' miRNA: 3'- cAGCUACU-CGCa--------CCGUGGCCGCGcGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 9858 | 1.08 | 0.000265 |
Target: 5'- cGUCGAUGAGCGUGGCACCGGCGCGCUg -3' miRNA: 3'- -CAGCUACUCGCACCGUGGCCGCGCGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 9985 | 0.75 | 0.086804 |
Target: 5'- -aCGGUGAGCGUGGCggggucgaaaguGCCG-CGCGCc -3' miRNA: 3'- caGCUACUCGCACCG------------UGGCcGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 10853 | 0.66 | 0.379352 |
Target: 5'- gGUCGAgcagGcccuGCGUGGCuuCGGUcgGCGCg -3' miRNA: 3'- -CAGCUa---Cu---CGCACCGugGCCG--CGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 11411 | 0.68 | 0.291321 |
Target: 5'- gGUCu-UGAGCaGcGGCgaGCCGGCGUGCa -3' miRNA: 3'- -CAGcuACUCG-CaCCG--UGGCCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 12599 | 0.77 | 0.065296 |
Target: 5'- cGUCGAUGAauuuGCGcaUGGCGCCGaCGCGCUc -3' miRNA: 3'- -CAGCUACU----CGC--ACCGUGGCcGCGCGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 13062 | 0.68 | 0.284163 |
Target: 5'- -cCGAgggcugGGGCaaGGcCACCGGCGCGUg -3' miRNA: 3'- caGCUa-----CUCGcaCC-GUGGCCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 14618 | 0.67 | 0.337231 |
Target: 5'- cGUCGGcuuccauGCuuccGGCGCCGGUGCGCa -3' miRNA: 3'- -CAGCUacu----CGca--CCGUGGCCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 14956 | 0.68 | 0.291321 |
Target: 5'- cUCGcGUGGuGCGUGGC---GGCGCGCUg -3' miRNA: 3'- cAGC-UACU-CGCACCGuggCCGCGCGA- -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 15006 | 0.68 | 0.263523 |
Target: 5'- -cCGccGGGCGcgGuGCGCCaGGCGCGCg -3' miRNA: 3'- caGCuaCUCGCa-C-CGUGG-CCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 16236 | 0.71 | 0.166072 |
Target: 5'- cUCGGUGAGCGgcacgauauggcggaUGGCGuuGGCcucGCGCg -3' miRNA: 3'- cAGCUACUCGC---------------ACCGUggCCG---CGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 16759 | 0.67 | 0.329226 |
Target: 5'- cUCG-UGGGCGUaGcCACCGGCGaCGUg -3' miRNA: 3'- cAGCuACUCGCAcC-GUGGCCGC-GCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 18280 | 0.67 | 0.30606 |
Target: 5'- cGUCGA--GGCGcUGG-GCCaGGCGCGCa -3' miRNA: 3'- -CAGCUacUCGC-ACCgUGG-CCGCGCGa -5' |
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26552 | 5' | -60.4 | NC_005357.1 | + | 18669 | 0.66 | 0.370651 |
Target: 5'- -gCGcAUcGGCccgGUGGCGCCGGCaugGCGCUg -3' miRNA: 3'- caGC-UAcUCG---CACCGUGGCCG---CGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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