miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 36053 0.66 0.307362
Target:  5'- gGCcuGCGCcugauuGCCGAcgugGGCCgguUCGCCACc -3'
miRNA:   3'- aCGu-CGCG------CGGCUa---CCGG---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 10058 0.66 0.307362
Target:  5'- cUGCugGGCG-GCCGG-GGCCUCgGCgGCg -3'
miRNA:   3'- -ACG--UCGCgCGGCUaCCGGAG-CGgUGa -5'
26553 3' -62 NC_005357.1 + 38410 0.66 0.307362
Target:  5'- cGCGGCaugaCGCUGGUGGCCggCGCg--- -3'
miRNA:   3'- aCGUCGc---GCGGCUACCGGa-GCGguga -5'
26553 3' -62 NC_005357.1 + 28317 0.66 0.306612
Target:  5'- -uCGGCGCGCucggcgucggacuCGAUGGCCUUgGCCuCg -3'
miRNA:   3'- acGUCGCGCG-------------GCUACCGGAG-CGGuGa -5'
26553 3' -62 NC_005357.1 + 18665 0.66 0.305117
Target:  5'- cGCGGCgcaucggcccggugGCGCCGGcaUGGCgCUgcugcgCGCCACc -3'
miRNA:   3'- aCGUCG--------------CGCGGCU--ACCG-GA------GCGGUGa -5'
26553 3' -62 NC_005357.1 + 10726 0.66 0.299928
Target:  5'- cGCGGCGgGCUGGUcaGGCggUGCUGCa -3'
miRNA:   3'- aCGUCGCgCGGCUA--CCGgaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 14590 0.66 0.299928
Target:  5'- aGCAGCgGCGC----GGCCggCGCCACc -3'
miRNA:   3'- aCGUCG-CGCGgcuaCCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 5138 0.66 0.299928
Target:  5'- cUGCAaCGUGCCGcgcaggcGGCCgUCGCUGCUc -3'
miRNA:   3'- -ACGUcGCGCGGCua-----CCGG-AGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 13806 0.66 0.299928
Target:  5'- aGUuuGCGCGCC--UGuGCCUCcuGCCACUc -3'
miRNA:   3'- aCGu-CGCGCGGcuAC-CGGAG--CGGUGA- -5'
26553 3' -62 NC_005357.1 + 18388 0.66 0.292634
Target:  5'- uUGCcGaugGCGCCGGUGGCg--GCCACg -3'
miRNA:   3'- -ACGuCg--CGCGGCUACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 30422 0.66 0.292634
Target:  5'- gGCauGGCGaugaGCgCGGgcagGGCCUCGCC-CUg -3'
miRNA:   3'- aCG--UCGCg---CG-GCUa---CCGGAGCGGuGA- -5'
26553 3' -62 NC_005357.1 + 17416 0.66 0.292634
Target:  5'- aGCGGCGCccacGUCGcccuugagcaGUGGCCcCGCCAg- -3'
miRNA:   3'- aCGUCGCG----CGGC----------UACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 19356 0.66 0.286189
Target:  5'- gGCGGCGgaauUGCCGuugaggucggccagGGCCUUGuCCACUu -3'
miRNA:   3'- aCGUCGC----GCGGCua------------CCGGAGC-GGUGA- -5'
26553 3' -62 NC_005357.1 + 27290 0.66 0.28548
Target:  5'- cGCcGCGCGCCuuggcGAaGGCUUC-CCACg -3'
miRNA:   3'- aCGuCGCGCGG-----CUaCCGGAGcGGUGa -5'
26553 3' -62 NC_005357.1 + 3755 0.66 0.28548
Target:  5'- gGCGGCacuucuCGCCGggGGCCUUGaguucgacCCACa -3'
miRNA:   3'- aCGUCGc-----GCGGCuaCCGGAGC--------GGUGa -5'
26553 3' -62 NC_005357.1 + 19609 0.66 0.28548
Target:  5'- gGCAGCGCGgCGAagucgGGCCagucCGgCACc -3'
miRNA:   3'- aCGUCGCGCgGCUa----CCGGa---GCgGUGa -5'
26553 3' -62 NC_005357.1 + 1142 0.66 0.28548
Target:  5'- aGCAGCG-GCCGuuuGCgCUCGCCGu- -3'
miRNA:   3'- aCGUCGCgCGGCuacCG-GAGCGGUga -5'
26553 3' -62 NC_005357.1 + 14767 0.66 0.284772
Target:  5'- cGCAGCGUGUCGGUGucgaucuGCUUCacgauGUCGCUg -3'
miRNA:   3'- aCGUCGCGCGGCUAC-------CGGAG-----CGGUGA- -5'
26553 3' -62 NC_005357.1 + 34923 0.66 0.281955
Target:  5'- cGCcgaaacGCGCGCCGccaguugcaaggGGCCUauaccacCGCCACUa -3'
miRNA:   3'- aCGu-----CGCGCGGCua----------CCGGA-------GCGGUGA- -5'
26553 3' -62 NC_005357.1 + 19046 0.66 0.281254
Target:  5'- aGCGGC-CGCCGgcGGCgucgaucagcgugucCUCGCCGa- -3'
miRNA:   3'- aCGUCGcGCGGCuaCCG---------------GAGCGGUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.