miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 17416 0.66 0.292634
Target:  5'- aGCGGCGCccacGUCGcccuugagcaGUGGCCcCGCCAg- -3'
miRNA:   3'- aCGUCGCG----CGGC----------UACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 27290 0.66 0.28548
Target:  5'- cGCcGCGCGCCuuggcGAaGGCUUC-CCACg -3'
miRNA:   3'- aCGuCGCGCGG-----CUaCCGGAGcGGUGa -5'
26553 3' -62 NC_005357.1 + 14767 0.66 0.284772
Target:  5'- cGCAGCGUGUCGGUGucgaucuGCUUCacgauGUCGCUg -3'
miRNA:   3'- aCGUCGCGCGGCUAC-------CGGAG-----CGGUGA- -5'
26553 3' -62 NC_005357.1 + 19356 0.66 0.286189
Target:  5'- gGCGGCGgaauUGCCGuugaggucggccagGGCCUUGuCCACUu -3'
miRNA:   3'- aCGUCGC----GCGGCua------------CCGGAGC-GGUGA- -5'
26553 3' -62 NC_005357.1 + 35937 0.67 0.264846
Target:  5'- gGCaAGCGCGUgaaUGcgGGCCUgCGCgGCg -3'
miRNA:   3'- aCG-UCGCGCG---GCuaCCGGA-GCGgUGa -5'
26553 3' -62 NC_005357.1 + 29809 0.67 0.245437
Target:  5'- aGCAGCGaUGCCGAgcgcGUCggCGCCAUg -3'
miRNA:   3'- aCGUCGC-GCGGCUac--CGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 20214 0.67 0.233164
Target:  5'- gGCAGCGCccgcgGCCGGcuguUGGCCUugggUGCCuuGCUc -3'
miRNA:   3'- aCGUCGCG-----CGGCU----ACCGGA----GCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 38738 0.67 0.251772
Target:  5'- gGCAGCGCGUCGccGUGGUggaUUCG-CACg -3'
miRNA:   3'- aCGUCGCGCGGC--UACCG---GAGCgGUGa -5'
26553 3' -62 NC_005357.1 + 28014 0.67 0.251772
Target:  5'- cGCAgGCGCGCC--UGGCgaCGCCcaGCUu -3'
miRNA:   3'- aCGU-CGCGCGGcuACCGgaGCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 39013 0.67 0.258241
Target:  5'- aGUAGCGgGgCCGAaaGGCCcCGCCAa- -3'
miRNA:   3'- aCGUCGCgC-GGCUa-CCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 19195 0.67 0.245437
Target:  5'- aGCgaGGCGCgGUCGGUGGCCgagGCCGa- -3'
miRNA:   3'- aCG--UCGCG-CGGCUACCGGag-CGGUga -5'
26553 3' -62 NC_005357.1 + 8550 0.67 0.258241
Target:  5'- cGaCAGcCGCGCCGAUGGCgggcaGCgACa -3'
miRNA:   3'- aC-GUC-GCGCGGCUACCGgag--CGgUGa -5'
26553 3' -62 NC_005357.1 + 7545 0.67 0.264846
Target:  5'- gGCGGCGUGCuCGAUccGCggCGCCACc -3'
miRNA:   3'- aCGUCGCGCG-GCUAc-CGgaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 40422 0.67 0.264179
Target:  5'- cGcCAGCgaGCGCCug-GGCCUCaagaucaGCCACUg -3'
miRNA:   3'- aC-GUCG--CGCGGcuaCCGGAG-------CGGUGA- -5'
26553 3' -62 NC_005357.1 + 14820 0.67 0.264179
Target:  5'- gGCGGCGCugccuucgcccagGUCGAUgccguuggcGGCCagCGCCGCa -3'
miRNA:   3'- aCGUCGCG-------------CGGCUA---------CCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 23175 0.68 0.204732
Target:  5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3'
miRNA:   3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.