miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 19868 0.7 0.152614
Target:  5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3'
miRNA:   3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5'
26553 3' -62 NC_005357.1 + 29396 0.7 0.140646
Target:  5'- aGCAaCGCGaugaCGA-GGCCgUCGCCACUg -3'
miRNA:   3'- aCGUcGCGCg---GCUaCCGG-AGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 21826 0.7 0.161099
Target:  5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3'
miRNA:   3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5'
26553 3' -62 NC_005357.1 + 14970 0.7 0.14219
Target:  5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5'
26553 3' -62 NC_005357.1 + 17176 0.69 0.170007
Target:  5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3'
miRNA:   3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 13355 0.69 0.183706
Target:  5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3'
miRNA:   3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5'
26553 3' -62 NC_005357.1 + 9639 0.69 0.170007
Target:  5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3'
miRNA:   3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 7953 0.69 0.174625
Target:  5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3'
miRNA:   3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5'
26553 3' -62 NC_005357.1 + 12017 0.69 0.179354
Target:  5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3'
miRNA:   3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5'
26553 3' -62 NC_005357.1 + 22803 0.69 0.194226
Target:  5'- gGuCAGCaugGUGCCGGacUGGCCcgacuUCGCCGCg -3'
miRNA:   3'- aC-GUCG---CGCGGCU--ACCGG-----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 32360 0.68 0.199419
Target:  5'- cUGCGGuCGcCGCCGA-GGCCcCgGCCGCc -3'
miRNA:   3'- -ACGUC-GC-GCGGCUaCCGGaG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 4529 0.68 0.204732
Target:  5'- cGUGGCGUGCUGGgcGGUCgugcCGCCGCg -3'
miRNA:   3'- aCGUCGCGCGGCUa-CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 8852 0.68 0.204732
Target:  5'- gGcCAGCGCGU---UGGCCucggUCGCCACg -3'
miRNA:   3'- aC-GUCGCGCGgcuACCGG----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 4878 0.68 0.209619
Target:  5'- uUGCccAGCGCGgCGAcggcGGCCUCguuuucgGCCACg -3'
miRNA:   3'- -ACG--UCGCGCgGCUa---CCGGAG-------CGGUGa -5'
26553 3' -62 NC_005357.1 + 32690 0.68 0.227224
Target:  5'- aGCAGUuCGCCGAcGuG-CUCGCCGCg -3'
miRNA:   3'- aCGUCGcGCGGCUaC-CgGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 19477 0.68 0.210168
Target:  5'- aGCuuGCGCcagguGCCGGUGGgCagGCCGCUg -3'
miRNA:   3'- aCGu-CGCG-----CGGCUACCgGagCGGUGA- -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 31626 0.68 0.227224
Target:  5'- cGCAGCGUGgCag-GGCCUCaaggcauaccguGCCGCUu -3'
miRNA:   3'- aCGUCGCGCgGcuaCCGGAG------------CGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.