miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 37761 0.68 0.221412
Target:  5'- -cCGGCGCGCUGGU-GCC-CGCCAa- -3'
miRNA:   3'- acGUCGCGCGGCUAcCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 8934 0.68 0.221412
Target:  5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 19477 0.68 0.210168
Target:  5'- aGCuuGCGCcagguGCCGGUGGgCagGCCGCUg -3'
miRNA:   3'- aCGu-CGCG-----CGGCUACCgGagCGGUGA- -5'
26553 3' -62 NC_005357.1 + 4878 0.68 0.209619
Target:  5'- uUGCccAGCGCGgCGAcggcGGCCUCguuuucgGCCACg -3'
miRNA:   3'- -ACG--UCGCGCgGCUa---CCGGAG-------CGGUGa -5'
26553 3' -62 NC_005357.1 + 8852 0.68 0.204732
Target:  5'- gGcCAGCGCGU---UGGCCucggUCGCCACg -3'
miRNA:   3'- aC-GUCGCGCGgcuACCGG----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 4529 0.68 0.204732
Target:  5'- cGUGGCGUGCUGGgcGGUCgugcCGCCGCg -3'
miRNA:   3'- aCGUCGCGCGGCUa-CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 32360 0.68 0.199419
Target:  5'- cUGCGGuCGcCGCCGA-GGCCcCgGCCGCc -3'
miRNA:   3'- -ACGUC-GC-GCGGCUaCCGGaG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 31626 0.68 0.227224
Target:  5'- cGCAGCGUGgCag-GGCCUCaaggcauaccguGCCGCUu -3'
miRNA:   3'- aCGUCGCGCgGcuaCCGGAG------------CGGUGA- -5'
26553 3' -62 NC_005357.1 + 32690 0.68 0.227224
Target:  5'- aGCAGUuCGCCGAcGuG-CUCGCCGCg -3'
miRNA:   3'- aCGUCGcGCGGCUaC-CgGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 13753 0.68 0.215727
Target:  5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 35340 0.68 0.204732
Target:  5'- cGCgugGGCGCGCCG-UGGgUagGCCGCg -3'
miRNA:   3'- aCG---UCGCGCGGCuACCgGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 23175 0.68 0.204732
Target:  5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3'
miRNA:   3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5'
26553 3' -62 NC_005357.1 + 16513 0.68 0.199419
Target:  5'- aGCgAG-GUGCCGGUGGUCUgGCCGa- -3'
miRNA:   3'- aCG-UCgCGCGGCUACCGGAgCGGUga -5'
26553 3' -62 NC_005357.1 + 35937 0.67 0.264846
Target:  5'- gGCaAGCGCGUgaaUGcgGGCCUgCGCgGCg -3'
miRNA:   3'- aCG-UCGCGCG---GCuaCCGGA-GCGgUGa -5'
26553 3' -62 NC_005357.1 + 14820 0.67 0.264179
Target:  5'- gGCGGCGCugccuucgcccagGUCGAUgccguuggcGGCCagCGCCGCa -3'
miRNA:   3'- aCGUCGCG-------------CGGCUA---------CCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 38738 0.67 0.251772
Target:  5'- gGCAGCGCGUCGccGUGGUggaUUCG-CACg -3'
miRNA:   3'- aCGUCGCGCGGC--UACCG---GAGCgGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.