miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 29098 0.7 0.152614
Target:  5'- gGCGGCGaccuGCCGAaaGCCUaCGCCGCc -3'
miRNA:   3'- aCGUCGCg---CGGCUacCGGA-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 19868 0.7 0.152614
Target:  5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3'
miRNA:   3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5'
26553 3' -62 NC_005357.1 + 27837 0.7 0.152614
Target:  5'- cGCGGUgGCGCC---GGCCgCGCCGCUg -3'
miRNA:   3'- aCGUCG-CGCGGcuaCCGGaGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 21826 0.7 0.161099
Target:  5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3'
miRNA:   3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5'
26553 3' -62 NC_005357.1 + 9639 0.69 0.170007
Target:  5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3'
miRNA:   3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 17176 0.69 0.170007
Target:  5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3'
miRNA:   3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 7953 0.69 0.174625
Target:  5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3'
miRNA:   3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5'
26553 3' -62 NC_005357.1 + 12017 0.69 0.179354
Target:  5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3'
miRNA:   3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5'
26553 3' -62 NC_005357.1 + 13355 0.69 0.183706
Target:  5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3'
miRNA:   3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5'
26553 3' -62 NC_005357.1 + 22803 0.69 0.194226
Target:  5'- gGuCAGCaugGUGCCGGacUGGCCcgacuUCGCCGCg -3'
miRNA:   3'- aC-GUCG---CGCGGCU--ACCGG-----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 5763 0.68 0.199419
Target:  5'- aGCgAGUGCGCCag-GGCCUUGaCCAUc -3'
miRNA:   3'- aCG-UCGCGCGGcuaCCGGAGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 32360 0.68 0.199419
Target:  5'- cUGCGGuCGcCGCCGA-GGCCcCgGCCGCc -3'
miRNA:   3'- -ACGUC-GC-GCGGCUaCCGGaG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 16513 0.68 0.199419
Target:  5'- aGCgAG-GUGCCGGUGGUCUgGCCGa- -3'
miRNA:   3'- aCG-UCgCGCGGCUACCGGAgCGGUga -5'
26553 3' -62 NC_005357.1 + 38225 0.68 0.20153
Target:  5'- cGguGCGCGCCGAUuccaacuuuucGGCgcccacuggcuacacCUCGaCCACg -3'
miRNA:   3'- aCguCGCGCGGCUA-----------CCG---------------GAGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 23175 0.68 0.204732
Target:  5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3'
miRNA:   3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5'
26553 3' -62 NC_005357.1 + 35340 0.68 0.204732
Target:  5'- cGCgugGGCGCGCCG-UGGgUagGCCGCg -3'
miRNA:   3'- aCG---UCGCGCGGCuACCgGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 8852 0.68 0.204732
Target:  5'- gGcCAGCGCGU---UGGCCucggUCGCCACg -3'
miRNA:   3'- aC-GUCGCGCGgcuACCGG----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 4529 0.68 0.204732
Target:  5'- cGUGGCGUGCUGGgcGGUCgugcCGCCGCg -3'
miRNA:   3'- aCGUCGCGCGGCUa-CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 8981 0.68 0.204732
Target:  5'- cGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.