miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 4878 0.68 0.209619
Target:  5'- uUGCccAGCGCGgCGAcggcGGCCUCguuuucgGCCACg -3'
miRNA:   3'- -ACG--UCGCGCgGCUa---CCGGAG-------CGGUGa -5'
26553 3' -62 NC_005357.1 + 19477 0.68 0.210168
Target:  5'- aGCuuGCGCcagguGCCGGUGGgCagGCCGCUg -3'
miRNA:   3'- aCGu-CGCG-----CGGCUACCgGagCGGUGA- -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 13753 0.68 0.215727
Target:  5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 8934 0.68 0.221412
Target:  5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 37761 0.68 0.221412
Target:  5'- -cCGGCGCGCUGGU-GCC-CGCCAa- -3'
miRNA:   3'- acGUCGCGCGGCUAcCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 24911 0.68 0.225467
Target:  5'- gGUGGCGCGCUauaucagcuuGGUGaaggacacgaccaaGUCUCGCCGCUg -3'
miRNA:   3'- aCGUCGCGCGG----------CUAC--------------CGGAGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 31626 0.68 0.227224
Target:  5'- cGCAGCGUGgCag-GGCCUCaaggcauaccguGCCGCUu -3'
miRNA:   3'- aCGUCGCGCgGcuaCCGGAG------------CGGUGA- -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 32690 0.68 0.227224
Target:  5'- aGCAGUuCGCCGAcGuG-CUCGCCGCg -3'
miRNA:   3'- aCGUCGcGCGGCUaC-CgGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 14617 0.68 0.227224
Target:  5'- gGCAGCGCGCgCGAggacgugcugcGGCUgCGCgGCg -3'
miRNA:   3'- aCGUCGCGCG-GCUa----------CCGGaGCGgUGa -5'
26553 3' -62 NC_005357.1 + 9173 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 9125 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 9077 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 9029 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 29345 0.68 0.227224
Target:  5'- uUGC-GCGCGUgGA-GGCCgagCGCCAa- -3'
miRNA:   3'- -ACGuCGCGCGgCUaCCGGa--GCGGUga -5'
26553 3' -62 NC_005357.1 + 20214 0.67 0.233164
Target:  5'- gGCAGCGCccgcgGCCGGcuguUGGCCUugggUGCCuuGCUc -3'
miRNA:   3'- aCGUCGCG-----CGGCU----ACCGGA----GCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 19195 0.67 0.245437
Target:  5'- aGCgaGGCGCgGUCGGUGGCCgagGCCGa- -3'
miRNA:   3'- aCG--UCGCG-CGGCUACCGGag-CGGUga -5'
26553 3' -62 NC_005357.1 + 29809 0.67 0.245437
Target:  5'- aGCAGCGaUGCCGAgcgcGUCggCGCCAUg -3'
miRNA:   3'- aCGUCGC-GCGGCUac--CGGa-GCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.