miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 10698 0.72 0.106718
Target:  5'- gGCAGCGCGCac--GGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCGCGgcuaCCGGAG-CGGUga -5'
26553 3' -62 NC_005357.1 + 10726 0.66 0.299928
Target:  5'- cGCGGCGgGCUGGUcaGGCggUGCUGCa -3'
miRNA:   3'- aCGUCGCgCGGCUA--CCGgaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 12017 0.69 0.179354
Target:  5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3'
miRNA:   3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5'
26553 3' -62 NC_005357.1 + 13020 0.73 0.085273
Target:  5'- cGCAGCGCaguGgCGAcGGCCUCGUCAUc -3'
miRNA:   3'- aCGUCGCG---CgGCUaCCGGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 13298 0.74 0.074025
Target:  5'- uUGCAGCGCGCCGG-GGCCggCGUUg-- -3'
miRNA:   3'- -ACGUCGCGCGGCUaCCGGa-GCGGuga -5'
26553 3' -62 NC_005357.1 + 13355 0.69 0.183706
Target:  5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3'
miRNA:   3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5'
26553 3' -62 NC_005357.1 + 13753 0.68 0.215727
Target:  5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 13806 0.66 0.299928
Target:  5'- aGUuuGCGCGCC--UGuGCCUCcuGCCACUc -3'
miRNA:   3'- aCGu-CGCGCGGcuAC-CGGAG--CGGUGA- -5'
26553 3' -62 NC_005357.1 + 13864 0.71 0.133151
Target:  5'- gGCcgacguGCGCGCCgcGAUGGCCggcgGCCGCa -3'
miRNA:   3'- aCGu-----CGCGCGG--CUACCGGag--CGGUGa -5'
26553 3' -62 NC_005357.1 + 14590 0.66 0.299928
Target:  5'- aGCAGCgGCGC----GGCCggCGCCACc -3'
miRNA:   3'- aCGUCG-CGCGgcuaCCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 14617 0.68 0.227224
Target:  5'- gGCAGCGCGCgCGAggacgugcugcGGCUgCGCgGCg -3'
miRNA:   3'- aCGUCGCGCG-GCUa----------CCGGaGCGgUGa -5'
26553 3' -62 NC_005357.1 + 14767 0.66 0.284772
Target:  5'- cGCAGCGUGUCGGUGucgaucuGCUUCacgauGUCGCUg -3'
miRNA:   3'- aCGUCGCGCGGCUAC-------CGGAG-----CGGUGA- -5'
26553 3' -62 NC_005357.1 + 14820 0.67 0.264179
Target:  5'- gGCGGCGCugccuucgcccagGUCGAUgccguuggcGGCCagCGCCGCa -3'
miRNA:   3'- aCGUCGCG-------------CGGCUA---------CCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 14970 0.7 0.14219
Target:  5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5'
26553 3' -62 NC_005357.1 + 16513 0.68 0.199419
Target:  5'- aGCgAG-GUGCCGGUGGUCUgGCCGa- -3'
miRNA:   3'- aCG-UCgCGCGGCUACCGGAgCGGUga -5'
26553 3' -62 NC_005357.1 + 17176 0.69 0.170007
Target:  5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3'
miRNA:   3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 17416 0.66 0.292634
Target:  5'- aGCGGCGCccacGUCGcccuugagcaGUGGCCcCGCCAg- -3'
miRNA:   3'- aCGUCGCG----CGGC----------UACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 17603 0.66 0.27777
Target:  5'- gGCuGCGCGUuguCGAUaccGGCCUCgauguuuGCCGCa -3'
miRNA:   3'- aCGuCGCGCG---GCUA---CCGGAG-------CGGUGa -5'
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 18388 0.66 0.292634
Target:  5'- uUGCcGaugGCGCCGGUGGCg--GCCACg -3'
miRNA:   3'- -ACGuCg--CGCGGCUACCGgagCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.