miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 18665 0.66 0.305117
Target:  5'- cGCGGCgcaucggcccggugGCGCCGGcaUGGCgCUgcugcgCGCCACc -3'
miRNA:   3'- aCGUCG--------------CGCGGCU--ACCG-GA------GCGGUGa -5'
26553 3' -62 NC_005357.1 + 19046 0.66 0.281254
Target:  5'- aGCGGC-CGCCGgcGGCgucgaucagcgugucCUCGCCGa- -3'
miRNA:   3'- aCGUCGcGCGGCuaCCG---------------GAGCGGUga -5'
26553 3' -62 NC_005357.1 + 19195 0.67 0.245437
Target:  5'- aGCgaGGCGCgGUCGGUGGCCgagGCCGa- -3'
miRNA:   3'- aCG--UCGCG-CGGCUACCGGag-CGGUga -5'
26553 3' -62 NC_005357.1 + 19356 0.66 0.286189
Target:  5'- gGCGGCGgaauUGCCGuugaggucggccagGGCCUUGuCCACUu -3'
miRNA:   3'- aCGUCGC----GCGGCua------------CCGGAGC-GGUGA- -5'
26553 3' -62 NC_005357.1 + 19477 0.68 0.210168
Target:  5'- aGCuuGCGCcagguGCCGGUGGgCagGCCGCUg -3'
miRNA:   3'- aCGu-CGCG-----CGGCUACCgGagCGGUGA- -5'
26553 3' -62 NC_005357.1 + 19609 0.66 0.28548
Target:  5'- gGCAGCGCGgCGAagucgGGCCagucCGgCACc -3'
miRNA:   3'- aCGUCGCGCgGCUa----CCGGa---GCgGUGa -5'
26553 3' -62 NC_005357.1 + 19868 0.7 0.152614
Target:  5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3'
miRNA:   3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5'
26553 3' -62 NC_005357.1 + 20214 0.67 0.233164
Target:  5'- gGCAGCGCccgcgGCCGGcuguUGGCCUugggUGCCuuGCUc -3'
miRNA:   3'- aCGUCGCG-----CGGCU----ACCGGA----GCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 20741 0.66 0.271586
Target:  5'- aUGCuGCugGCGCCGuagaGGCgCUgCGCCGCg -3'
miRNA:   3'- -ACGuCG--CGCGGCua--CCG-GA-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 21826 0.7 0.161099
Target:  5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3'
miRNA:   3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5'
26553 3' -62 NC_005357.1 + 22803 0.69 0.194226
Target:  5'- gGuCAGCaugGUGCCGGacUGGCCcgacuUCGCCGCg -3'
miRNA:   3'- aC-GUCG---CGCGGCU--ACCGG-----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 23175 0.68 0.204732
Target:  5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3'
miRNA:   3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5'
26553 3' -62 NC_005357.1 + 23335 0.75 0.058933
Target:  5'- gGUAGcCGCGCaauuCGAcGGCCUCGCCGCc -3'
miRNA:   3'- aCGUC-GCGCG----GCUaCCGGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 23536 0.77 0.04551
Target:  5'- gGCGGCGCacgcgGUCGAUGGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCG-----CGGCUACCGGAG-CGGUga -5'
26553 3' -62 NC_005357.1 + 23750 0.74 0.071952
Target:  5'- aGCAGCGCcauGCCGGcgccaccgGGCCgaugCGCCGCg -3'
miRNA:   3'- aCGUCGCG---CGGCUa-------CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 24557 0.75 0.0624
Target:  5'- cGCAGCGCGgCGAUggcgaGGCCg-GCCACg -3'
miRNA:   3'- aCGUCGCGCgGCUA-----CCGGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 24646 0.66 0.271586
Target:  5'- gUGcCGGCGgGCCagGAUGGUgUUGUCGCg -3'
miRNA:   3'- -AC-GUCGCgCGG--CUACCGgAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 24911 0.68 0.225467
Target:  5'- gGUGGCGCGCUauaucagcuuGGUGaaggacacgaccaaGUCUCGCCGCUg -3'
miRNA:   3'- aCGUCGCGCGG----------CUAC--------------CGGAGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 25772 0.66 0.278464
Target:  5'- gGCGGCG-GCaaCGAUGGCCgcgaugcgCGCgGCg -3'
miRNA:   3'- aCGUCGCgCG--GCUACCGGa-------GCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.