miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 29345 0.68 0.227224
Target:  5'- uUGC-GCGCGUgGA-GGCCgagCGCCAa- -3'
miRNA:   3'- -ACGuCGCGCGgCUaCCGGa--GCGGUga -5'
26553 3' -62 NC_005357.1 + 29098 0.7 0.152614
Target:  5'- gGCGGCGaccuGCCGAaaGCCUaCGCCGCc -3'
miRNA:   3'- aCGUCGCg---CGGCUacCGGA-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 28653 0.78 0.037179
Target:  5'- cGCAGUGCcagaucgguGCCGgcGGCCUCGCCAg- -3'
miRNA:   3'- aCGUCGCG---------CGGCuaCCGGAGCGGUga -5'
26553 3' -62 NC_005357.1 + 28359 0.71 0.136851
Target:  5'- gGCAGCGCGCgGAUGGUUUC-CUugGCg -3'
miRNA:   3'- aCGUCGCGCGgCUACCGGAGcGG--UGa -5'
26553 3' -62 NC_005357.1 + 28317 0.66 0.306612
Target:  5'- -uCGGCGCGCucggcgucggacuCGAUGGCCUUgGCCuCg -3'
miRNA:   3'- acGUCGCGCG-------------GCUACCGGAG-CGGuGa -5'
26553 3' -62 NC_005357.1 + 28149 0.73 0.092786
Target:  5'- aGCAGCuuGCCGGUGGUCagaUCGaCCACg -3'
miRNA:   3'- aCGUCGcgCGGCUACCGG---AGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 28014 0.67 0.251772
Target:  5'- cGCAgGCGCGCC--UGGCgaCGCCcaGCUu -3'
miRNA:   3'- aCGU-CGCGCGGcuACCGgaGCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 27837 0.7 0.152614
Target:  5'- cGCGGUgGCGCC---GGCCgCGCCGCUg -3'
miRNA:   3'- aCGUCG-CGCGGcuaCCGGaGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 27701 0.72 0.112824
Target:  5'- gGCcGCGCGCCGGcagcGG-CUCGCCGCc -3'
miRNA:   3'- aCGuCGCGCGGCUa---CCgGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 27290 0.66 0.28548
Target:  5'- cGCcGCGCGCCuuggcGAaGGCUUC-CCACg -3'
miRNA:   3'- aCGuCGCGCGG-----CUaCCGGAGcGGUGa -5'
26553 3' -62 NC_005357.1 + 25772 0.66 0.278464
Target:  5'- gGCGGCG-GCaaCGAUGGCCgcgaugcgCGCgGCg -3'
miRNA:   3'- aCGUCGCgCG--GCUACCGGa-------GCGgUGa -5'
26553 3' -62 NC_005357.1 + 24911 0.68 0.225467
Target:  5'- gGUGGCGCGCUauaucagcuuGGUGaaggacacgaccaaGUCUCGCCGCUg -3'
miRNA:   3'- aCGUCGCGCGG----------CUAC--------------CGGAGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 24646 0.66 0.271586
Target:  5'- gUGcCGGCGgGCCagGAUGGUgUUGUCGCg -3'
miRNA:   3'- -AC-GUCGCgCGG--CUACCGgAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 24557 0.75 0.0624
Target:  5'- cGCAGCGCGgCGAUggcgaGGCCg-GCCACg -3'
miRNA:   3'- aCGUCGCGCgGCUA-----CCGGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 23750 0.74 0.071952
Target:  5'- aGCAGCGCcauGCCGGcgccaccgGGCCgaugCGCCGCg -3'
miRNA:   3'- aCGUCGCG---CGGCUa-------CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 23536 0.77 0.04551
Target:  5'- gGCGGCGCacgcgGUCGAUGGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCG-----CGGCUACCGGAG-CGGUga -5'
26553 3' -62 NC_005357.1 + 23335 0.75 0.058933
Target:  5'- gGUAGcCGCGCaauuCGAcGGCCUCGCCGCc -3'
miRNA:   3'- aCGUC-GCGCG----GCUaCCGGAGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.