Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26553 | 3' | -62 | NC_005357.1 | + | 22803 | 0.69 | 0.194226 |
Target: 5'- gGuCAGCaugGUGCCGGacUGGCCcgacuUCGCCGCg -3' miRNA: 3'- aC-GUCG---CGCGGCU--ACCGG-----AGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 27701 | 0.72 | 0.112824 |
Target: 5'- gGCcGCGCGCCGGcagcGG-CUCGCCGCc -3' miRNA: 3'- aCGuCGCGCGGCUa---CCgGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 28359 | 0.71 | 0.136851 |
Target: 5'- gGCAGCGCGCgGAUGGUUUC-CUugGCg -3' miRNA: 3'- aCGUCGCGCGgCUACCGGAGcGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 31509 | 0.7 | 0.140646 |
Target: 5'- cGcCGGCGUGCUGcugGGCCUCGCUg-- -3' miRNA: 3'- aC-GUCGCGCGGCua-CCGGAGCGGuga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 19868 | 0.7 | 0.152614 |
Target: 5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3' miRNA: 3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 27837 | 0.7 | 0.152614 |
Target: 5'- cGCGGUgGCGCC---GGCCgCGCCGCUg -3' miRNA: 3'- aCGUCG-CGCGGcuaCCGGaGCGGUGA- -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 21826 | 0.7 | 0.161099 |
Target: 5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3' miRNA: 3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 7953 | 0.69 | 0.174625 |
Target: 5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3' miRNA: 3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 12017 | 0.69 | 0.179354 |
Target: 5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3' miRNA: 3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 10698 | 0.72 | 0.106718 |
Target: 5'- gGCAGCGCGCac--GGCCUCgGCCGa- -3' miRNA: 3'- aCGUCGCGCGgcuaCCGGAG-CGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 28149 | 0.73 | 0.092786 |
Target: 5'- aGCAGCuuGCCGGUGGUCagaUCGaCCACg -3' miRNA: 3'- aCGUCGcgCGGCUACCGG---AGC-GGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13020 | 0.73 | 0.085273 |
Target: 5'- cGCAGCGCaguGgCGAcGGCCUCGUCAUc -3' miRNA: 3'- aCGUCGCG---CgGCUaCCGGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 28653 | 0.78 | 0.037179 |
Target: 5'- cGCAGUGCcagaucgguGCCGgcGGCCUCGCCAg- -3' miRNA: 3'- aCGUCGCG---------CGGCuaCCGGAGCGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 8915 | 0.78 | 0.039852 |
Target: 5'- gGCGGCGCGCuCGAUGGCUucgggcguggacaguUCGCCGa- -3' miRNA: 3'- aCGUCGCGCG-GCUACCGG---------------AGCGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 23536 | 0.77 | 0.04551 |
Target: 5'- gGCGGCGCacgcgGUCGAUGGCCUCgGCCGa- -3' miRNA: 3'- aCGUCGCG-----CGGCUACCGGAG-CGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 23335 | 0.75 | 0.058933 |
Target: 5'- gGUAGcCGCGCaauuCGAcGGCCUCGCCGCc -3' miRNA: 3'- aCGUC-GCGCG----GCUaCCGGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 24557 | 0.75 | 0.0624 |
Target: 5'- cGCAGCGCGgCGAUggcgaGGCCg-GCCACg -3' miRNA: 3'- aCGUCGCGCgGCUA-----CCGGagCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 29359 | 0.75 | 0.069936 |
Target: 5'- -cCA-CGCGCCGGUGGCCUUGCCcCa -3' miRNA: 3'- acGUcGCGCGGCUACCGGAGCGGuGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 23750 | 0.74 | 0.071952 |
Target: 5'- aGCAGCGCcauGCCGGcgccaccgGGCCgaugCGCCGCg -3' miRNA: 3'- aCGUCGCG---CGGCUa-------CCGGa---GCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13298 | 0.74 | 0.074025 |
Target: 5'- uUGCAGCGCGCCGG-GGCCggCGUUg-- -3' miRNA: 3'- -ACGUCGCGCGGCUaCCGGa-GCGGuga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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