Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26553 | 3' | -62 | NC_005357.1 | + | 16513 | 0.68 | 0.199419 |
Target: 5'- aGCgAG-GUGCCGGUGGUCUgGCCGa- -3' miRNA: 3'- aCG-UCgCGCGGCUACCGGAgCGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 22803 | 0.69 | 0.194226 |
Target: 5'- gGuCAGCaugGUGCCGGacUGGCCcgacuUCGCCGCg -3' miRNA: 3'- aC-GUCG---CGCGGCU--ACCGG-----AGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 12017 | 0.69 | 0.179354 |
Target: 5'- aGCAGCGCgGCCG-UGGCCggcgaggucUUGCCcaGCg -3' miRNA: 3'- aCGUCGCG-CGGCuACCGG---------AGCGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 7953 | 0.69 | 0.174625 |
Target: 5'- cGaCAGCuuGCCcGUGGCCUCGgCGCg -3' miRNA: 3'- aC-GUCGcgCGGcUACCGGAGCgGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 21826 | 0.7 | 0.161099 |
Target: 5'- aGCGGCGgGUugcucuuguaguCGAUGGCCUgCGCCuuGCg -3' miRNA: 3'- aCGUCGCgCG------------GCUACCGGA-GCGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 27837 | 0.7 | 0.152614 |
Target: 5'- cGCGGUgGCGCC---GGCCgCGCCGCUg -3' miRNA: 3'- aCGUCG-CGCGGcuaCCGGaGCGGUGA- -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 19868 | 0.7 | 0.152614 |
Target: 5'- aGUucgGGCGUGCCGAaGGCgUCGCgCGCc -3' miRNA: 3'- aCG---UCGCGCGGCUaCCGgAGCG-GUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 31509 | 0.7 | 0.140646 |
Target: 5'- cGcCGGCGUGCUGcugGGCCUCGCUg-- -3' miRNA: 3'- aC-GUCGCGCGGCua-CCGGAGCGGuga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 28359 | 0.71 | 0.136851 |
Target: 5'- gGCAGCGCGCgGAUGGUUUC-CUugGCg -3' miRNA: 3'- aCGUCGCGCGgCUACCGGAGcGG--UGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 9639 | 0.69 | 0.170007 |
Target: 5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3' miRNA: 3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13355 | 0.69 | 0.183706 |
Target: 5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3' miRNA: 3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 5763 | 0.68 | 0.199419 |
Target: 5'- aGCgAGUGCGCCag-GGCCUUGaCCAUc -3' miRNA: 3'- aCG-UCGCGCGGcuaCCGGAGC-GGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 38225 | 0.68 | 0.20153 |
Target: 5'- cGguGCGCGCCGAUuccaacuuuucGGCgcccacuggcuacacCUCGaCCACg -3' miRNA: 3'- aCguCGCGCGGCUA-----------CCG---------------GAGC-GGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 17176 | 0.69 | 0.170007 |
Target: 5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3' miRNA: 3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 29098 | 0.7 | 0.152614 |
Target: 5'- gGCGGCGaccuGCCGAaaGCCUaCGCCGCc -3' miRNA: 3'- aCGUCGCg---CGGCUacCGGA-GCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 14970 | 0.7 | 0.14219 |
Target: 5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3' miRNA: 3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 29396 | 0.7 | 0.140646 |
Target: 5'- aGCAaCGCGaugaCGA-GGCCgUCGCCACUg -3' miRNA: 3'- aCGUcGCGCg---GCUaCCGG-AGCGGUGA- -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13864 | 0.71 | 0.133151 |
Target: 5'- gGCcgacguGCGCGCCgcGAUGGCCggcgGCCGCa -3' miRNA: 3'- aCGu-----CGCGCGG--CUACCGGag--CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 33207 | 0.71 | 0.129543 |
Target: 5'- cGCcgGGCGCGCCGcagaacGUGcGCCgCGCCGCc -3' miRNA: 3'- aCG--UCGCGCGGC------UAC-CGGaGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 38410 | 0.66 | 0.307362 |
Target: 5'- cGCGGCaugaCGCUGGUGGCCggCGCg--- -3' miRNA: 3'- aCGUCGc---GCGGCUACCGGa-GCGguga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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