Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26553 | 3' | -62 | NC_005357.1 | + | 39013 | 0.67 | 0.258241 |
Target: 5'- aGUAGCGgGgCCGAaaGGCCcCGCCAa- -3' miRNA: 3'- aCGUCGCgC-GGCUa-CCGGaGCGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 8550 | 0.67 | 0.258241 |
Target: 5'- cGaCAGcCGCGCCGAUGGCgggcaGCgACa -3' miRNA: 3'- aC-GUC-GCGCGGCUACCGgag--CGgUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 40422 | 0.67 | 0.264179 |
Target: 5'- cGcCAGCgaGCGCCug-GGCCUCaagaucaGCCACUg -3' miRNA: 3'- aC-GUCG--CGCGGcuaCCGGAG-------CGGUGA- -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 7545 | 0.67 | 0.264846 |
Target: 5'- gGCGGCGUGCuCGAUccGCggCGCCACc -3' miRNA: 3'- aCGUCGCGCG-GCUAc-CGgaGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 8934 | 0.68 | 0.221412 |
Target: 5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3' miRNA: 3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13753 | 0.68 | 0.215727 |
Target: 5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3' miRNA: 3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 33207 | 0.71 | 0.129543 |
Target: 5'- cGCcgGGCGCGCCGcagaacGUGcGCCgCGCCGCc -3' miRNA: 3'- aCG--UCGCGCGGC------UAC-CGGaGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13864 | 0.71 | 0.133151 |
Target: 5'- gGCcgacguGCGCGCCgcGAUGGCCggcgGCCGCa -3' miRNA: 3'- aCGu-----CGCGCGG--CUACCGGag--CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 29396 | 0.7 | 0.140646 |
Target: 5'- aGCAaCGCGaugaCGA-GGCCgUCGCCACUg -3' miRNA: 3'- aCGUcGCGCg---GCUaCCGG-AGCGGUGA- -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 14970 | 0.7 | 0.14219 |
Target: 5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3' miRNA: 3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 29098 | 0.7 | 0.152614 |
Target: 5'- gGCGGCGaccuGCCGAaaGCCUaCGCCGCc -3' miRNA: 3'- aCGUCGCg---CGGCUacCGGA-GCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 17176 | 0.69 | 0.170007 |
Target: 5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3' miRNA: 3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 9639 | 0.69 | 0.170007 |
Target: 5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3' miRNA: 3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 13355 | 0.69 | 0.183706 |
Target: 5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3' miRNA: 3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 5763 | 0.68 | 0.199419 |
Target: 5'- aGCgAGUGCGCCag-GGCCUUGaCCAUc -3' miRNA: 3'- aCG-UCGCGCGGcuaCCGGAGC-GGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 38225 | 0.68 | 0.20153 |
Target: 5'- cGguGCGCGCCGAUuccaacuuuucGGCgcccacuggcuacacCUCGaCCACg -3' miRNA: 3'- aCguCGCGCGGCUA-----------CCG---------------GAGC-GGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 8981 | 0.68 | 0.204732 |
Target: 5'- cGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3' miRNA: 3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 23175 | 0.68 | 0.204732 |
Target: 5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3' miRNA: 3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 17769 | 0.68 | 0.204732 |
Target: 5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3' miRNA: 3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5' |
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26553 | 3' | -62 | NC_005357.1 | + | 35340 | 0.68 | 0.204732 |
Target: 5'- cGCgugGGCGCGCCG-UGGgUagGCCGCg -3' miRNA: 3'- aCG---UCGCGCGGCuACCgGagCGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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