miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 32566 0.74 0.076154
Target:  5'- aGCAGCGCGCCGGUG-CCaCGCuCAUc -3'
miRNA:   3'- aCGUCGCGCGGCUACcGGaGCG-GUGa -5'
26553 3' -62 NC_005357.1 + 37761 0.68 0.221412
Target:  5'- -cCGGCGCGCUGGU-GCC-CGCCAa- -3'
miRNA:   3'- acGUCGCGCGGCUAcCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 9029 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 38410 0.66 0.307362
Target:  5'- cGCGGCaugaCGCUGGUGGCCggCGCg--- -3'
miRNA:   3'- aCGUCGc---GCGGCUACCGGa-GCGguga -5'
26553 3' -62 NC_005357.1 + 14970 0.7 0.14219
Target:  5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5'
26553 3' -62 NC_005357.1 + 29098 0.7 0.152614
Target:  5'- gGCGGCGaccuGCCGAaaGCCUaCGCCGCc -3'
miRNA:   3'- aCGUCGCg---CGGCUacCGGA-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 9639 0.69 0.170007
Target:  5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3'
miRNA:   3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 13355 0.69 0.183706
Target:  5'- -uCGGCGCccgaggaugacccGCUGAUGGCCUacgaGCCGCc -3'
miRNA:   3'- acGUCGCG-------------CGGCUACCGGAg---CGGUGa -5'
26553 3' -62 NC_005357.1 + 8981 0.68 0.204732
Target:  5'- cGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 8934 0.68 0.221412
Target:  5'- gGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 38225 0.68 0.20153
Target:  5'- cGguGCGCGCCGAUuccaacuuuucGGCgcccacuggcuacacCUCGaCCACg -3'
miRNA:   3'- aCguCGCGCGGCUA-----------CCG---------------GAGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 33207 0.71 0.129543
Target:  5'- cGCcgGGCGCGCCGcagaacGUGcGCCgCGCCGCc -3'
miRNA:   3'- aCG--UCGCGCGGC------UAC-CGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 35340 0.68 0.204732
Target:  5'- cGCgugGGCGCGCCG-UGGgUagGCCGCg -3'
miRNA:   3'- aCG---UCGCGCGGCuACCgGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 13864 0.71 0.133151
Target:  5'- gGCcgacguGCGCGCCgcGAUGGCCggcgGCCGCa -3'
miRNA:   3'- aCGu-----CGCGCGG--CUACCGGag--CGGUGa -5'
26553 3' -62 NC_005357.1 + 5763 0.68 0.199419
Target:  5'- aGCgAGUGCGCCag-GGCCUUGaCCAUc -3'
miRNA:   3'- aCG-UCGCGCGGcuaCCGGAGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 13753 0.68 0.215727
Target:  5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 24911 0.68 0.225467
Target:  5'- gGUGGCGCGCUauaucagcuuGGUGaaggacacgaccaaGUCUCGCCGCUg -3'
miRNA:   3'- aCGUCGCGCGG----------CUAC--------------CGGAGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 29396 0.7 0.140646
Target:  5'- aGCAaCGCGaugaCGA-GGCCgUCGCCACUg -3'
miRNA:   3'- aCGUcGCGCg---GCUaCCGG-AGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 17176 0.69 0.170007
Target:  5'- aGCAGCGCGagcaacaGGUGcGCUUCGUCAUg -3'
miRNA:   3'- aCGUCGCGCgg-----CUAC-CGGAGCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.