miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 9173 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 9029 0.68 0.227224
Target:  5'- gGUGGcCGUGCCGcgauagccagcgGUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGC------------UACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 38225 0.68 0.20153
Target:  5'- cGguGCGCGCCGAUuccaacuuuucGGCgcccacuggcuacacCUCGaCCACg -3'
miRNA:   3'- aCguCGCGCGGCUA-----------CCG---------------GAGC-GGUGa -5'
26553 3' -62 NC_005357.1 + 29396 0.7 0.140646
Target:  5'- aGCAaCGCGaugaCGA-GGCCgUCGCCACUg -3'
miRNA:   3'- aCGUcGCGCg---GCUaCCGG-AGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 3755 0.66 0.28548
Target:  5'- gGCGGCacuucuCGCCGggGGCCUUGaguucgacCCACa -3'
miRNA:   3'- aCGUCGc-----GCGGCuaCCGGAGC--------GGUGa -5'
26553 3' -62 NC_005357.1 + 28014 0.67 0.251772
Target:  5'- cGCAgGCGCGCC--UGGCgaCGCCcaGCUu -3'
miRNA:   3'- aCGU-CGCGCGGcuACCGgaGCGG--UGA- -5'
26553 3' -62 NC_005357.1 + 37761 0.68 0.221412
Target:  5'- -cCGGCGCGCUGGU-GCC-CGCCAa- -3'
miRNA:   3'- acGUCGCGCGGCUAcCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 13864 0.71 0.133151
Target:  5'- gGCcgacguGCGCGCCgcGAUGGCCggcgGCCGCa -3'
miRNA:   3'- aCGu-----CGCGCGG--CUACCGGag--CGGUGa -5'
26553 3' -62 NC_005357.1 + 29809 0.67 0.245437
Target:  5'- aGCAGCGaUGCCGAgcgcGUCggCGCCAUg -3'
miRNA:   3'- aCGUCGC-GCGGCUac--CGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 33207 0.71 0.129543
Target:  5'- cGCcgGGCGCGCCGcagaacGUGcGCCgCGCCGCc -3'
miRNA:   3'- aCG--UCGCGCGGC------UAC-CGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 24911 0.68 0.225467
Target:  5'- gGUGGCGCGCUauaucagcuuGGUGaaggacacgaccaaGUCUCGCCGCUg -3'
miRNA:   3'- aCGUCGCGCGG----------CUAC--------------CGGAGCGGUGA- -5'
26553 3' -62 NC_005357.1 + 14617 0.68 0.227224
Target:  5'- gGCAGCGCGCgCGAggacgugcugcGGCUgCGCgGCg -3'
miRNA:   3'- aCGUCGCGCG-GCUa----------CCGGaGCGgUGa -5'
26553 3' -62 NC_005357.1 + 35340 0.68 0.204732
Target:  5'- cGCgugGGCGCGCCG-UGGgUagGCCGCg -3'
miRNA:   3'- aCG---UCGCGCGGCuACCgGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 8981 0.68 0.204732
Target:  5'- cGUGGcCGUGCCGGauucgccagcggUGGCCgUGCCGCg -3'
miRNA:   3'- aCGUC-GCGCGGCU------------ACCGGaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 9639 0.69 0.170007
Target:  5'- cGCAGCaccagcgagGUGCCGAgggcGGaCUUCGCCGCc -3'
miRNA:   3'- aCGUCG---------CGCGGCUa---CC-GGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 14970 0.7 0.14219
Target:  5'- gGCGGCGCGCUGGcauaccagcgccagGGCCUgCgGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCUa-------------CCGGA-G-CGGUGa -5'
26553 3' -62 NC_005357.1 + 14590 0.66 0.299928
Target:  5'- aGCAGCgGCGC----GGCCggCGCCACc -3'
miRNA:   3'- aCGUCG-CGCGgcuaCCGGa-GCGGUGa -5'
26553 3' -62 NC_005357.1 + 19609 0.66 0.28548
Target:  5'- gGCAGCGCGgCGAagucgGGCCagucCGgCACc -3'
miRNA:   3'- aCGUCGCGCgGCUa----CCGGa---GCgGUGa -5'
26553 3' -62 NC_005357.1 + 7545 0.67 0.264846
Target:  5'- gGCGGCGUGCuCGAUccGCggCGCCACc -3'
miRNA:   3'- aCGUCGCGCG-GCUAc-CGgaGCGGUGa -5'
26553 3' -62 NC_005357.1 + 39013 0.67 0.258241
Target:  5'- aGUAGCGgGgCCGAaaGGCCcCGCCAa- -3'
miRNA:   3'- aCGUCGCgC-GGCUa-CCGGaGCGGUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.