miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 3' -62 NC_005357.1 + 17769 0.68 0.204732
Target:  5'- cGCGGCGgGCgCGAcaacaccauccUGGCC-CGCCGg- -3'
miRNA:   3'- aCGUCGCgCG-GCU-----------ACCGGaGCGGUga -5'
26553 3' -62 NC_005357.1 + 23175 0.68 0.204732
Target:  5'- aGCAuCGaCGCCGAgaaguucaugGGCCUgaCGCCGCg -3'
miRNA:   3'- aCGUcGC-GCGGCUa---------CCGGA--GCGGUGa -5'
26553 3' -62 NC_005357.1 + 13753 0.68 0.215727
Target:  5'- cGUGGCGCGCCGcgcUGGCgagGCCGCc -3'
miRNA:   3'- aCGUCGCGCGGCu--ACCGgagCGGUGa -5'
26553 3' -62 NC_005357.1 + 29359 0.75 0.069936
Target:  5'- -cCA-CGCGCCGGUGGCCUUGCCcCa -3'
miRNA:   3'- acGUcGCGCGGCUACCGGAGCGGuGa -5'
26553 3' -62 NC_005357.1 + 31626 0.68 0.227224
Target:  5'- cGCAGCGUGgCag-GGCCUCaaggcauaccguGCCGCUu -3'
miRNA:   3'- aCGUCGCGCgGcuaCCGGAG------------CGGUGA- -5'
26553 3' -62 NC_005357.1 + 24557 0.75 0.0624
Target:  5'- cGCAGCGCGgCGAUggcgaGGCCg-GCCACg -3'
miRNA:   3'- aCGUCGCGCgGCUA-----CCGGagCGGUGa -5'
26553 3' -62 NC_005357.1 + 8915 0.78 0.039852
Target:  5'- gGCGGCGCGCuCGAUGGCUucgggcguggacaguUCGCCGa- -3'
miRNA:   3'- aCGUCGCGCG-GCUACCGG---------------AGCGGUga -5'
26553 3' -62 NC_005357.1 + 19477 0.68 0.210168
Target:  5'- aGCuuGCGCcagguGCCGGUGGgCagGCCGCUg -3'
miRNA:   3'- aCGu-CGCG-----CGGCUACCgGagCGGUGA- -5'
26553 3' -62 NC_005357.1 + 28317 0.66 0.306612
Target:  5'- -uCGGCGCGCucggcgucggacuCGAUGGCCUUgGCCuCg -3'
miRNA:   3'- acGUCGCGCG-------------GCUACCGGAG-CGGuGa -5'
26553 3' -62 NC_005357.1 + 13806 0.66 0.299928
Target:  5'- aGUuuGCGCGCC--UGuGCCUCcuGCCACUc -3'
miRNA:   3'- aCGu-CGCGCGGcuAC-CGGAG--CGGUGA- -5'
26553 3' -62 NC_005357.1 + 27589 0.68 0.215727
Target:  5'- gGCAGCaggcgGCGCCaGAUGGCguggUCGUCGCc -3'
miRNA:   3'- aCGUCG-----CGCGG-CUACCGg---AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 24144 0.68 0.215727
Target:  5'- gGCuGCGCGCC--UGGCCcagCGCCuCg -3'
miRNA:   3'- aCGuCGCGCGGcuACCGGa--GCGGuGa -5'
26553 3' -62 NC_005357.1 + 27485 0.68 0.227224
Target:  5'- cGCAccacGCGaggauGCCGgcGGCCUCgGCCGCc -3'
miRNA:   3'- aCGU----CGCg----CGGCuaCCGGAG-CGGUGa -5'
26553 3' -62 NC_005357.1 + 4878 0.68 0.209619
Target:  5'- uUGCccAGCGCGgCGAcggcGGCCUCguuuucgGCCACg -3'
miRNA:   3'- -ACG--UCGCGCgGCUa---CCGGAG-------CGGUGa -5'
26553 3' -62 NC_005357.1 + 8852 0.68 0.204732
Target:  5'- gGcCAGCGCGU---UGGCCucggUCGCCACg -3'
miRNA:   3'- aC-GUCGCGCGgcuACCGG----AGCGGUGa -5'
26553 3' -62 NC_005357.1 + 4529 0.68 0.204732
Target:  5'- cGUGGCGUGCUGGgcGGUCgugcCGCCGCg -3'
miRNA:   3'- aCGUCGCGCGGCUa-CCGGa---GCGGUGa -5'
26553 3' -62 NC_005357.1 + 31509 0.7 0.140646
Target:  5'- cGcCGGCGUGCUGcugGGCCUCGCUg-- -3'
miRNA:   3'- aC-GUCGCGCGGCua-CCGGAGCGGuga -5'
26553 3' -62 NC_005357.1 + 28359 0.71 0.136851
Target:  5'- gGCAGCGCGCgGAUGGUUUC-CUugGCg -3'
miRNA:   3'- aCGUCGCGCGgCUACCGGAGcGG--UGa -5'
26553 3' -62 NC_005357.1 + 27701 0.72 0.112824
Target:  5'- gGCcGCGCGCCGGcagcGG-CUCGCCGCc -3'
miRNA:   3'- aCGuCGCGCGGCUa---CCgGAGCGGUGa -5'
26553 3' -62 NC_005357.1 + 10698 0.72 0.106718
Target:  5'- gGCAGCGCGCac--GGCCUCgGCCGa- -3'
miRNA:   3'- aCGUCGCGCGgcuaCCGGAG-CGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.