Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26553 | 5' | -53.5 | NC_005357.1 | + | 13446 | 0.68 | 0.591398 |
Target: 5'- cCCGcCAGCUUGGCGGccucgGGCGCg---- -3' miRNA: 3'- -GGUuGUCGAACCGUUa----CCGCGggaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 26017 | 0.68 | 0.602823 |
Target: 5'- uUCGAgGGCUUccucGGCGAUGGCaucaaaGCCCg-- -3' miRNA: 3'- -GGUUgUCGAA----CCGUUACCG------CGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 13166 | 0.68 | 0.557383 |
Target: 5'- gUCGGcCAGUgucGGCcgcgcugGGCGCCCUUGg -3' miRNA: 3'- -GGUU-GUCGaa-CCGuua----CCGCGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 26364 | 0.69 | 0.546163 |
Target: 5'- aUCGGCAGauuuuuGCAAUcGCGCCCUUGg -3' miRNA: 3'- -GGUUGUCgaac--CGUUAcCGCGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 30014 | 0.69 | 0.502091 |
Target: 5'- uCCAACuGCacGGCc---GCGCCCUUGg -3' miRNA: 3'- -GGUUGuCGaaCCGuuacCGCGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 6157 | 0.69 | 0.52395 |
Target: 5'- cCCAGgGGUgaGGCAcgGGCaCCCUUa -3' miRNA: 3'- -GGUUgUCGaaCCGUuaCCGcGGGAAc -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 618 | 0.7 | 0.48064 |
Target: 5'- gCCAGCAGCgccgUGGacacGGCGUCCg-- -3' miRNA: 3'- -GGUUGUCGa---ACCguuaCCGCGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 11460 | 0.7 | 0.48064 |
Target: 5'- aCCGGCAGCUuuucagUGGCGuauucgAUGGuCGCCUg-- -3' miRNA: 3'- -GGUUGUCGA------ACCGU------UACC-GCGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 20007 | 0.71 | 0.390295 |
Target: 5'- gCCAACuuGCUcGGC-AUGGCGCgCCUg- -3' miRNA: 3'- -GGUUGu-CGAaCCGuUACCGCG-GGAac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 8475 | 0.71 | 0.403615 |
Target: 5'- uCCAGCAGaUUGGCGAUcuggucGGCauaguccacgucgauGCCCUUGa -3' miRNA: 3'- -GGUUGUCgAACCGUUA------CCG---------------CGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 40441 | 0.71 | 0.419184 |
Target: 5'- cUCAAgauCAGCcacUGGCAgGUGGCGCCCg-- -3' miRNA: 3'- -GGUU---GUCGa--ACCGU-UACCGCGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 12014 | 0.71 | 0.419184 |
Target: 5'- gCCAGCAGCgcGGCcGUGGCcggcgaggucuuGCCCa-- -3' miRNA: 3'- -GGUUGUCGaaCCGuUACCG------------CGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 3161 | 0.72 | 0.371772 |
Target: 5'- aCCAaaaucGCAGCaUGGCAAgcccGGCGUCCg-- -3' miRNA: 3'- -GGU-----UGUCGaACCGUUa---CCGCGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 2598 | 0.72 | 0.371772 |
Target: 5'- gCCAGCAGgUUGGCGA-GGuCGUacuCCUUGa -3' miRNA: 3'- -GGUUGUCgAACCGUUaCC-GCG---GGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 27586 | 0.72 | 0.345132 |
Target: 5'- aCCGGCAGCaggcGGCGccagAUGGCguggucgucGCCCUUGa -3' miRNA: 3'- -GGUUGUCGaa--CCGU----UACCG---------CGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 15435 | 0.73 | 0.31989 |
Target: 5'- aCC-ACAGCUUGuuGAUGuucuugacGCGCCCUUGg -3' miRNA: 3'- -GGuUGUCGAACcgUUAC--------CGCGGGAAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 18369 | 0.74 | 0.280951 |
Target: 5'- gCCGGCGGCgaggUUGGCcuugccGAUGGCGCCggUGg -3' miRNA: 3'- -GGUUGUCG----AACCG------UUACCGCGGgaAC- -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 37471 | 0.75 | 0.232888 |
Target: 5'- aCCAGCAGCgcgauacgcGGCugcaucGUGGCGCCCg-- -3' miRNA: 3'- -GGUUGUCGaa-------CCGu-----UACCGCGGGaac -5' |
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26553 | 5' | -53.5 | NC_005357.1 | + | 10438 | 1.11 | 0.000664 |
Target: 5'- uCCAACAGCUUGGCAAUGGCGCCCUUGg -3' miRNA: 3'- -GGUUGUCGAACCGUUACCGCGGGAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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