miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 5' -53.5 NC_005357.1 + 16710 0.68 0.591398
Target:  5'- gUAGCGGUagGuGUAGUcGGUGCCCUUGu -3'
miRNA:   3'- gGUUGUCGaaC-CGUUA-CCGCGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 17413 0.66 0.726743
Target:  5'- uUCAGCGGCgcccacgucgcccUUGaGCAGUGGC-CCCg-- -3'
miRNA:   3'- -GGUUGUCG-------------AAC-CGUUACCGcGGGaac -5'
26553 5' -53.5 NC_005357.1 + 18369 0.74 0.280951
Target:  5'- gCCGGCGGCgaggUUGGCcuugccGAUGGCGCCggUGg -3'
miRNA:   3'- -GGUUGUCG----AACCG------UUACCGCGGgaAC- -5'
26553 5' -53.5 NC_005357.1 + 20007 0.71 0.390295
Target:  5'- gCCAACuuGCUcGGC-AUGGCGCgCCUg- -3'
miRNA:   3'- -GGUUGu-CGAaCCGuUACCGCG-GGAac -5'
26553 5' -53.5 NC_005357.1 + 21140 0.67 0.648693
Target:  5'- ---cCAGCUUGGCcgccGUGuccGCGCCCUg- -3'
miRNA:   3'- gguuGUCGAACCGu---UAC---CGCGGGAac -5'
26553 5' -53.5 NC_005357.1 + 21702 0.68 0.614276
Target:  5'- gCCAGCAGCaugucGGCcugauggGGUGCCCg-- -3'
miRNA:   3'- -GGUUGUCGaa---CCGuua----CCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 22699 0.67 0.637222
Target:  5'- aCCAGCccaAGCagGGCGAUgcgcGGCGCCuCUa- -3'
miRNA:   3'- -GGUUG---UCGaaCCGUUA----CCGCGG-GAac -5'
26553 5' -53.5 NC_005357.1 + 24545 0.66 0.716749
Target:  5'- aCCGcguggucgcGCAGCgcGGCGAUGGCGaggCCg-- -3'
miRNA:   3'- -GGU---------UGUCGaaCCGUUACCGCg--GGaac -5'
26553 5' -53.5 NC_005357.1 + 26017 0.68 0.602823
Target:  5'- uUCGAgGGCUUccucGGCGAUGGCaucaaaGCCCg-- -3'
miRNA:   3'- -GGUUgUCGAA----CCGUUACCG------CGGGaac -5'
26553 5' -53.5 NC_005357.1 + 26364 0.69 0.546163
Target:  5'- aUCGGCAGauuuuuGCAAUcGCGCCCUUGg -3'
miRNA:   3'- -GGUUGUCgaac--CGUUAcCGCGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 27586 0.72 0.345132
Target:  5'- aCCGGCAGCaggcGGCGccagAUGGCguggucgucGCCCUUGa -3'
miRNA:   3'- -GGUUGUCGaa--CCGU----UACCG---------CGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 28147 0.67 0.648693
Target:  5'- gCAGCAGCUUGcCGGUGGUcagaucgaccacGCCgUUGc -3'
miRNA:   3'- gGUUGUCGAACcGUUACCG------------CGGgAAC- -5'
26553 5' -53.5 NC_005357.1 + 29584 0.67 0.625746
Target:  5'- aCCAACAGCccGGaCGAguUGGCGCgCa-- -3'
miRNA:   3'- -GGUUGUCGaaCC-GUU--ACCGCGgGaac -5'
26553 5' -53.5 NC_005357.1 + 30014 0.69 0.502091
Target:  5'- uCCAACuGCacGGCc---GCGCCCUUGg -3'
miRNA:   3'- -GGUUGuCGaaCCGuuacCGCGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 37471 0.75 0.232888
Target:  5'- aCCAGCAGCgcgauacgcGGCugcaucGUGGCGCCCg-- -3'
miRNA:   3'- -GGUUGUCGaa-------CCGu-----UACCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 38704 0.68 0.557383
Target:  5'- aCCAcCGGCgugaacGGCAcgGGCGCCa--- -3'
miRNA:   3'- -GGUuGUCGaa----CCGUuaCCGCGGgaac -5'
26553 5' -53.5 NC_005357.1 + 39578 0.67 0.671573
Target:  5'- gCCAacgcuACGGCUUGGCg--GGCugGCCUUUc -3'
miRNA:   3'- -GGU-----UGUCGAACCGuuaCCG--CGGGAAc -5'
26553 5' -53.5 NC_005357.1 + 40441 0.71 0.419184
Target:  5'- cUCAAgauCAGCcacUGGCAgGUGGCGCCCg-- -3'
miRNA:   3'- -GGUU---GUCGa--ACCGU-UACCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 42018 0.66 0.694292
Target:  5'- gCCGACGaucaccgccguGCUgcUGGUg--GGCGCCCUg- -3'
miRNA:   3'- -GGUUGU-----------CGA--ACCGuuaCCGCGGGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.