miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26553 5' -53.5 NC_005357.1 + 3161 0.72 0.371772
Target:  5'- aCCAaaaucGCAGCaUGGCAAgcccGGCGUCCg-- -3'
miRNA:   3'- -GGU-----UGUCGaACCGUUa---CCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 20007 0.71 0.390295
Target:  5'- gCCAACuuGCUcGGC-AUGGCGCgCCUg- -3'
miRNA:   3'- -GGUUGu-CGAaCCGuUACCGCG-GGAac -5'
26553 5' -53.5 NC_005357.1 + 8475 0.71 0.403615
Target:  5'- uCCAGCAGaUUGGCGAUcuggucGGCauaguccacgucgauGCCCUUGa -3'
miRNA:   3'- -GGUUGUCgAACCGUUA------CCG---------------CGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 12014 0.71 0.419184
Target:  5'- gCCAGCAGCgcGGCcGUGGCcggcgaggucuuGCCCa-- -3'
miRNA:   3'- -GGUUGUCGaaCCGuUACCG------------CGGGaac -5'
26553 5' -53.5 NC_005357.1 + 618 0.7 0.48064
Target:  5'- gCCAGCAGCgccgUGGacacGGCGUCCg-- -3'
miRNA:   3'- -GGUUGUCGa---ACCguuaCCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 11460 0.7 0.48064
Target:  5'- aCCGGCAGCUuuucagUGGCGuauucgAUGGuCGCCUg-- -3'
miRNA:   3'- -GGUUGUCGA------ACCGU------UACC-GCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 6738 0.67 0.637222
Target:  5'- --cACGGCgucGGCcuUGGCGCCCc-- -3'
miRNA:   3'- gguUGUCGaa-CCGuuACCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 22699 0.67 0.637222
Target:  5'- aCCAGCccaAGCagGGCGAUgcgcGGCGCCuCUa- -3'
miRNA:   3'- -GGUUG---UCGaaCCGUUA----CCGCGG-GAac -5'
26553 5' -53.5 NC_005357.1 + 39578 0.67 0.671573
Target:  5'- gCCAacgcuACGGCUUGGCg--GGCugGCCUUUc -3'
miRNA:   3'- -GGU-----UGUCGAACCGuuaCCG--CGGGAAc -5'
26553 5' -53.5 NC_005357.1 + 5107 0.67 0.671573
Target:  5'- cCCAGCguccGGUgcGGC--UGGCGCCgUUGa -3'
miRNA:   3'- -GGUUG----UCGaaCCGuuACCGCGGgAAC- -5'
26553 5' -53.5 NC_005357.1 + 42018 0.66 0.694292
Target:  5'- gCCGACGaucaccgccguGCUgcUGGUg--GGCGCCCUg- -3'
miRNA:   3'- -GGUUGU-----------CGA--ACCGuuaCCGCGGGAac -5'
26553 5' -53.5 NC_005357.1 + 29584 0.67 0.625746
Target:  5'- aCCAACAGCccGGaCGAguUGGCGCgCa-- -3'
miRNA:   3'- -GGUUGUCGaaCC-GUU--ACCGCGgGaac -5'
26553 5' -53.5 NC_005357.1 + 13559 0.67 0.625746
Target:  5'- gCCAGCAGCgaggacgUGGCGc-GGCGCUg--- -3'
miRNA:   3'- -GGUUGUCGa------ACCGUuaCCGCGGgaac -5'
26553 5' -53.5 NC_005357.1 + 7990 0.67 0.625746
Target:  5'- gCAGCAGCaccacGGCGucggacGUGCCCUUGg -3'
miRNA:   3'- gGUUGUCGaa---CCGUuac---CGCGGGAAC- -5'
26553 5' -53.5 NC_005357.1 + 21702 0.68 0.614276
Target:  5'- gCCAGCAGCaugucGGCcugauggGGUGCCCg-- -3'
miRNA:   3'- -GGUUGUCGaa---CCGuua----CCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 9239 0.68 0.602823
Target:  5'- gCCAGCGGUggccgUGcCGAgGGCGCCCa-- -3'
miRNA:   3'- -GGUUGUCGa----ACcGUUaCCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 38704 0.68 0.557383
Target:  5'- aCCAcCGGCgugaacGGCAcgGGCGCCa--- -3'
miRNA:   3'- -GGUuGUCGaa----CCGUuaCCGCGGgaac -5'
26553 5' -53.5 NC_005357.1 + 40441 0.71 0.419184
Target:  5'- cUCAAgauCAGCcacUGGCAgGUGGCGCCCg-- -3'
miRNA:   3'- -GGUU---GUCGa--ACCGU-UACCGCGGGaac -5'
26553 5' -53.5 NC_005357.1 + 8603 0.66 0.694292
Target:  5'- aCCGugGGgaUGGCGuaggcGUGGCcgguacGCCCUUc -3'
miRNA:   3'- -GGUugUCgaACCGU-----UACCG------CGGGAAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.