Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26554 | 3' | -51.8 | NC_005357.1 | + | 11711 | 0.66 | 0.855416 |
Target: 5'- cCGC-UUGGCGAggucuuUGGACUGCgcaccccauugugCGAACu -3' miRNA: 3'- -GCGuAACCGCU------GCUUGACGa------------GCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 22313 | 0.66 | 0.850163 |
Target: 5'- gGCAUUcGaCGACGGugUGCU-GGGCGc -3' miRNA: 3'- gCGUAAcC-GCUGCUugACGAgCUUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 29772 | 0.66 | 0.850163 |
Target: 5'- gCGCAUgaugGGCGACGAcccgAC-GCcaaaGGACGg -3' miRNA: 3'- -GCGUAa---CCGCUGCU----UGaCGag--CUUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 7617 | 0.66 | 0.84928 |
Target: 5'- uGCcgUGGUGAUGGucaggggGCgcgGCUCGAcccACGc -3' miRNA: 3'- gCGuaACCGCUGCU-------UGa--CGAGCU---UGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 29088 | 0.66 | 0.841214 |
Target: 5'- gCGCGacUUcGGCGGCGAcCUGC-CGAAa- -3' miRNA: 3'- -GCGU--AA-CCGCUGCUuGACGaGCUUgc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 10721 | 0.66 | 0.841214 |
Target: 5'- cCGCGc--GCGGCGGGCUGgUCaGGCGg -3' miRNA: 3'- -GCGUaacCGCUGCUUGACgAGcUUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 39344 | 0.66 | 0.841214 |
Target: 5'- cCGCGUgucgaagGGC-AUGggUgcgGCUCGGGCGc -3' miRNA: 3'- -GCGUAa------CCGcUGCuuGa--CGAGCUUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 35809 | 0.66 | 0.840306 |
Target: 5'- gCGCGaagcUGGCGGCGGACuacgccaUGCUCu-ACGu -3' miRNA: 3'- -GCGUa---ACCGCUGCUUG-------ACGAGcuUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 9313 | 0.66 | 0.832028 |
Target: 5'- gGCGaccUGGCGGCGcACgucgGCgcggCGGGCGg -3' miRNA: 3'- gCGUa--ACCGCUGCuUGa---CGa---GCUUGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 7672 | 0.66 | 0.831097 |
Target: 5'- aCGCGccguucuUUGGCGGCGAuCUGCggccgguagcccUCGAAg- -3' miRNA: 3'- -GCGU-------AACCGCUGCUuGACG------------AGCUUgc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 7539 | 0.66 | 0.812989 |
Target: 5'- gCGCuc-GGCGGCG---UGCUCGAuccGCGg -3' miRNA: 3'- -GCGuaaCCGCUGCuugACGAGCU---UGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 21296 | 0.66 | 0.812989 |
Target: 5'- aGCGgucGGCGuCGAACUugUCGAGCa -3' miRNA: 3'- gCGUaa-CCGCuGCUUGAcgAGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 30422 | 0.67 | 0.803157 |
Target: 5'- gGCA-UGGCGAUGAGCg---CGGGCa -3' miRNA: 3'- gCGUaACCGCUGCUUGacgaGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 19340 | 0.67 | 0.803157 |
Target: 5'- cCGcCGUUGGCGucgggGCGAGCaUGUacaugUCGAACa -3' miRNA: 3'- -GC-GUAACCGC-----UGCUUG-ACG-----AGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 24821 | 0.67 | 0.803157 |
Target: 5'- aGCAUcUGGCuGCGcAAUgGCUCGGGCa -3' miRNA: 3'- gCGUA-ACCGcUGC-UUGaCGAGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 39162 | 0.67 | 0.78703 |
Target: 5'- gGCGUUGcGCGG-GAAauguuccugaagugcCUGCUCGGGCa -3' miRNA: 3'- gCGUAAC-CGCUgCUU---------------GACGAGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 7751 | 0.67 | 0.782927 |
Target: 5'- uGCuGUUGGCGACGAAggaauccagGCUCGcGCc -3' miRNA: 3'- gCG-UAACCGCUGCUUga-------CGAGCuUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 34359 | 0.67 | 0.772553 |
Target: 5'- gCGCGccuugGGCGGUGAACUGauggUCGAGCa -3' miRNA: 3'- -GCGUaa---CCGCUGCUUGACg---AGCUUGc -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 5352 | 0.67 | 0.772553 |
Target: 5'- uGuCGUUGGCGACagccAACaUGCUCGAcagguGCGu -3' miRNA: 3'- gC-GUAACCGCUGc---UUG-ACGAGCU-----UGC- -5' |
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26554 | 3' | -51.8 | NC_005357.1 | + | 19748 | 0.67 | 0.762024 |
Target: 5'- uCGCGcUGGgGGC-AACUGCgcacCGAGCGc -3' miRNA: 3'- -GCGUaACCgCUGcUUGACGa---GCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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