Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26554 | 5' | -59.9 | NC_005357.1 | + | 20024 | 0.66 | 0.410504 |
Target: 5'- gGCGCGCcugcaucacagGcAGCAUCUUGUCGagcaccaGUUGCGc -3' miRNA: 3'- gCGCGCG-----------C-UCGUGGAACAGC-------CGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 8434 | 0.66 | 0.40136 |
Target: 5'- gGCGuCGCGgaacaucGGCGCgaUGUCGGCgucgagguggccUGCGa -3' miRNA: 3'- gCGC-GCGC-------UCGUGgaACAGCCG------------ACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 28648 | 0.66 | 0.393241 |
Target: 5'- cCGCGCGC-AGUGCCagaUCGGUgccgGCGg -3' miRNA: 3'- -GCGCGCGcUCGUGGaacAGCCGa---CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 35941 | 0.66 | 0.393241 |
Target: 5'- aGCGCGUGAauGCggGCCUgcgCGGCgUGCa -3' miRNA: 3'- gCGCGCGCU--CG--UGGAacaGCCG-ACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 37043 | 0.66 | 0.387889 |
Target: 5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3' miRNA: 3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 14643 | 0.66 | 0.384347 |
Target: 5'- gGUGCGCaGAuugauaccuuGCACCUUGgccUGGgUGCGg -3' miRNA: 3'- gCGCGCG-CU----------CGUGGAACa--GCCgACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 9737 | 0.66 | 0.375587 |
Target: 5'- aCGCG-GCGAGCAC---GUCGGCgaacUGCu -3' miRNA: 3'- -GCGCgCGCUCGUGgaaCAGCCG----ACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 19585 | 0.66 | 0.375587 |
Target: 5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3' miRNA: 3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 23743 | 0.67 | 0.366108 |
Target: 5'- gGCGCGCaGcAGCGCCaUGcCGGCgccaccgggccgaUGCGc -3' miRNA: 3'- gCGCGCG-C-UCGUGGaACaGCCG-------------ACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 22556 | 0.67 | 0.358475 |
Target: 5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3' miRNA: 3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 8999 | 0.67 | 0.358475 |
Target: 5'- cCGCGCGgGGGCGCUUccagcaGGCgGCGc -3' miRNA: 3'- -GCGCGCgCUCGUGGAacag--CCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 30273 | 0.67 | 0.350127 |
Target: 5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3' miRNA: 3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 26049 | 0.67 | 0.350127 |
Target: 5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3' miRNA: 3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 1086 | 0.67 | 0.350127 |
Target: 5'- gGCGCGC--GUACUUcaUGUUGGCgGCGg -3' miRNA: 3'- gCGCGCGcuCGUGGA--ACAGCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 6720 | 0.67 | 0.341917 |
Target: 5'- gGCGCGCaucugcuuGAGCACggcGUCGGCcuugGCGc -3' miRNA: 3'- gCGCGCG--------CUCGUGgaaCAGCCGa---CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 9897 | 0.67 | 0.341917 |
Target: 5'- gGCGCGUG-GCGa--UGUCGaGCUGCa -3' miRNA: 3'- gCGCGCGCuCGUggaACAGC-CGACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 1332 | 0.67 | 0.333848 |
Target: 5'- cCGacaaGCGCGAGgaaGCCgugGUCGGCgGCc -3' miRNA: 3'- -GCg---CGCGCUCg--UGGaa-CAGCCGaCGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 19901 | 0.67 | 0.333848 |
Target: 5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3' miRNA: 3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 38047 | 0.68 | 0.302976 |
Target: 5'- gGCGCGaCG-GCGCCU----GGCUGCGc -3' miRNA: 3'- gCGCGC-GCuCGUGGAacagCCGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 4206 | 0.68 | 0.295609 |
Target: 5'- gGC-CGCGAGCACgUcG-CGGCUuGCGg -3' miRNA: 3'- gCGcGCGCUCGUGgAaCaGCCGA-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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