miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26554 5' -59.9 NC_005357.1 + 19585 0.66 0.375587
Target:  5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3'
miRNA:   3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 19901 0.67 0.333848
Target:  5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3'
miRNA:   3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5'
26554 5' -59.9 NC_005357.1 + 20024 0.66 0.410504
Target:  5'- gGCGCGCcugcaucacagGcAGCAUCUUGUCGagcaccaGUUGCGc -3'
miRNA:   3'- gCGCGCG-----------C-UCGUGGAACAGC-------CGACGC- -5'
26554 5' -59.9 NC_005357.1 + 22411 0.7 0.212284
Target:  5'- aGCGCGUGAcGUucgccagccacGCCUUGaCGGCgGCGg -3'
miRNA:   3'- gCGCGCGCU-CG-----------UGGAACaGCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 22556 0.67 0.358475
Target:  5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3'
miRNA:   3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5'
26554 5' -59.9 NC_005357.1 + 23743 0.67 0.366108
Target:  5'- gGCGCGCaGcAGCGCCaUGcCGGCgccaccgggccgaUGCGc -3'
miRNA:   3'- gCGCGCG-C-UCGUGGaACaGCCG-------------ACGC- -5'
26554 5' -59.9 NC_005357.1 + 24147 0.74 0.11388
Target:  5'- uGCGCGCcuggcccAGCGCCUcGaCGGCUGCGc -3'
miRNA:   3'- gCGCGCGc------UCGUGGAaCaGCCGACGC- -5'
26554 5' -59.9 NC_005357.1 + 26049 0.67 0.350127
Target:  5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3'
miRNA:   3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5'
26554 5' -59.9 NC_005357.1 + 26241 0.72 0.170309
Target:  5'- uGCGCGCGucgccgaaggcacgGGCACCcgccggccugGUCGGCUcGCGc -3'
miRNA:   3'- gCGCGCGC--------------UCGUGGaa--------CAGCCGA-CGC- -5'
26554 5' -59.9 NC_005357.1 + 28648 0.66 0.393241
Target:  5'- cCGCGCGC-AGUGCCagaUCGGUgccgGCGg -3'
miRNA:   3'- -GCGCGCGcUCGUGGaacAGCCGa---CGC- -5'
26554 5' -59.9 NC_005357.1 + 28863 0.69 0.250472
Target:  5'- aGCGCGCGuucaacaucgccgugGGCACCgaGUCaGGCgGCc -3'
miRNA:   3'- gCGCGCGC---------------UCGUGGaaCAG-CCGaCGc -5'
26554 5' -59.9 NC_005357.1 + 30273 0.67 0.350127
Target:  5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3'
miRNA:   3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5'
26554 5' -59.9 NC_005357.1 + 35338 0.69 0.274348
Target:  5'- uGCGCGUGGGCgcGCCguggGUaGGCcGCGg -3'
miRNA:   3'- gCGCGCGCUCG--UGGaa--CAgCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 35941 0.66 0.393241
Target:  5'- aGCGCGUGAauGCggGCCUgcgCGGCgUGCa -3'
miRNA:   3'- gCGCGCGCU--CG--UGGAacaGCCG-ACGc -5'
26554 5' -59.9 NC_005357.1 + 37043 0.66 0.387889
Target:  5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3'
miRNA:   3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5'
26554 5' -59.9 NC_005357.1 + 38047 0.68 0.302976
Target:  5'- gGCGCGaCG-GCGCCU----GGCUGCGc -3'
miRNA:   3'- gCGCGC-GCuCGUGGAacagCCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.