Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26554 | 5' | -59.9 | NC_005357.1 | + | 6720 | 0.67 | 0.341917 |
Target: 5'- gGCGCGCaucugcuuGAGCACggcGUCGGCcuugGCGc -3' miRNA: 3'- gCGCGCG--------CUCGUGgaaCAGCCGa---CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 1086 | 0.67 | 0.350127 |
Target: 5'- gGCGCGC--GUACUUcaUGUUGGCgGCGg -3' miRNA: 3'- gCGCGCGcuCGUGGA--ACAGCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 22556 | 0.67 | 0.358475 |
Target: 5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3' miRNA: 3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 19585 | 0.66 | 0.375587 |
Target: 5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3' miRNA: 3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 9737 | 0.66 | 0.375587 |
Target: 5'- aCGCG-GCGAGCAC---GUCGGCgaacUGCu -3' miRNA: 3'- -GCGCgCGCUCGUGgaaCAGCCG----ACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 37043 | 0.66 | 0.387889 |
Target: 5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3' miRNA: 3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 19901 | 0.67 | 0.333848 |
Target: 5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3' miRNA: 3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 4206 | 0.68 | 0.295609 |
Target: 5'- gGC-CGCGAGCACgUcG-CGGCUuGCGg -3' miRNA: 3'- gCGcGCGCUCGUGgAaCaGCCGA-CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 35338 | 0.69 | 0.274348 |
Target: 5'- uGCGCGUGGGCgcGCCguggGUaGGCcGCGg -3' miRNA: 3'- gCGCGCGCUCG--UGGaa--CAgCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 28863 | 0.69 | 0.250472 |
Target: 5'- aGCGCGCGuucaacaucgccgugGGCACCgaGUCaGGCgGCc -3' miRNA: 3'- gCGCGCGC---------------UCGUGGaaCAG-CCGaCGc -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 19328 | 0.69 | 0.241661 |
Target: 5'- uCGC-CGUGGGCGCCgccGUUGGCgucgggGCGa -3' miRNA: 3'- -GCGcGCGCUCGUGGaa-CAGCCGa-----CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 7000 | 0.7 | 0.212284 |
Target: 5'- -aCGCGCGAGCGg---GUCGGCUcGCGu -3' miRNA: 3'- gcGCGCGCUCGUggaaCAGCCGA-CGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 5399 | 0.72 | 0.162683 |
Target: 5'- gCGCGcCGCGAGCACCUUcugcGUacgcuccaCGGC-GCGg -3' miRNA: 3'- -GCGC-GCGCUCGUGGAA----CA--------GCCGaCGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 14621 | 0.78 | 0.056107 |
Target: 5'- gCGCGCGCGAGgACgUgcugCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCUCgUGgAaca-GCCGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 18000 | 0.79 | 0.050009 |
Target: 5'- cCGCGCGCG-GCACCgacaaaucggGcCGGCUGCGc -3' miRNA: 3'- -GCGCGCGCuCGUGGaa--------CaGCCGACGC- -5' |
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26554 | 5' | -59.9 | NC_005357.1 | + | 8434 | 0.66 | 0.40136 |
Target: 5'- gGCGuCGCGgaacaucGGCGCgaUGUCGGCgucgagguggccUGCGa -3' miRNA: 3'- gCGC-GCGC-------UCGUGgaACAGCCG------------ACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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