miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26554 5' -59.9 NC_005357.1 + 14621 0.78 0.056107
Target:  5'- gCGCGCGCGAGgACgUgcugCGGCUGCGc -3'
miRNA:   3'- -GCGCGCGCUCgUGgAaca-GCCGACGC- -5'
26554 5' -59.9 NC_005357.1 + 19585 0.66 0.375587
Target:  5'- uCGCaGCGCGcGCugUcggcUGUCGGCaGCGc -3'
miRNA:   3'- -GCG-CGCGCuCGugGa---ACAGCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 6720 0.67 0.341917
Target:  5'- gGCGCGCaucugcuuGAGCACggcGUCGGCcuugGCGc -3'
miRNA:   3'- gCGCGCG--------CUCGUGgaaCAGCCGa---CGC- -5'
26554 5' -59.9 NC_005357.1 + 19901 0.67 0.333848
Target:  5'- aCGCGCGCGcuGCGCgUgcUCG-CUGCGg -3'
miRNA:   3'- -GCGCGCGCu-CGUGgAacAGCcGACGC- -5'
26554 5' -59.9 NC_005357.1 + 35338 0.69 0.274348
Target:  5'- uGCGCGUGGGCgcGCCguggGUaGGCcGCGg -3'
miRNA:   3'- gCGCGCGCUCG--UGGaa--CAgCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 28863 0.69 0.250472
Target:  5'- aGCGCGCGuucaacaucgccgugGGCACCgaGUCaGGCgGCc -3'
miRNA:   3'- gCGCGCGC---------------UCGUGGaaCAG-CCGaCGc -5'
26554 5' -59.9 NC_005357.1 + 9737 0.66 0.375587
Target:  5'- aCGCG-GCGAGCAC---GUCGGCgaacUGCu -3'
miRNA:   3'- -GCGCgCGCUCGUGgaaCAGCCG----ACGc -5'
26554 5' -59.9 NC_005357.1 + 22556 0.67 0.358475
Target:  5'- gGCGCGCGA-CGCCU--UCGGCacGCc -3'
miRNA:   3'- gCGCGCGCUcGUGGAacAGCCGa-CGc -5'
26554 5' -59.9 NC_005357.1 + 4206 0.68 0.295609
Target:  5'- gGC-CGCGAGCACgUcG-CGGCUuGCGg -3'
miRNA:   3'- gCGcGCGCUCGUGgAaCaGCCGA-CGC- -5'
26554 5' -59.9 NC_005357.1 + 19328 0.69 0.241661
Target:  5'- uCGC-CGUGGGCGCCgccGUUGGCgucgggGCGa -3'
miRNA:   3'- -GCGcGCGCUCGUGGaa-CAGCCGa-----CGC- -5'
26554 5' -59.9 NC_005357.1 + 5399 0.72 0.162683
Target:  5'- gCGCGcCGCGAGCACCUUcugcGUacgcuccaCGGC-GCGg -3'
miRNA:   3'- -GCGC-GCGCUCGUGGAA----CA--------GCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 37043 0.66 0.387889
Target:  5'- gGCGaCGUGAGCACCgucagcacgcaccugUcgagcaUGUUGGCUGUc -3'
miRNA:   3'- gCGC-GCGCUCGUGG---------------A------ACAGCCGACGc -5'
26554 5' -59.9 NC_005357.1 + 7000 0.7 0.212284
Target:  5'- -aCGCGCGAGCGg---GUCGGCUcGCGu -3'
miRNA:   3'- gcGCGCGCUCGUggaaCAGCCGA-CGC- -5'
26554 5' -59.9 NC_005357.1 + 1086 0.67 0.350127
Target:  5'- gGCGCGC--GUACUUcaUGUUGGCgGCGg -3'
miRNA:   3'- gCGCGCGcuCGUGGA--ACAGCCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 8434 0.66 0.40136
Target:  5'- gGCGuCGCGgaacaucGGCGCgaUGUCGGCgucgagguggccUGCGa -3'
miRNA:   3'- gCGC-GCGC-------UCGUGgaACAGCCG------------ACGC- -5'
26554 5' -59.9 NC_005357.1 + 18000 0.79 0.050009
Target:  5'- cCGCGCGCG-GCACCgacaaaucggGcCGGCUGCGc -3'
miRNA:   3'- -GCGCGCGCuCGUGGaa--------CaGCCGACGC- -5'
26554 5' -59.9 NC_005357.1 + 8999 0.67 0.358475
Target:  5'- cCGCGCGgGGGCGCUUccagcaGGCgGCGc -3'
miRNA:   3'- -GCGCGCgCUCGUGGAacag--CCGaCGC- -5'
26554 5' -59.9 NC_005357.1 + 26049 0.67 0.350127
Target:  5'- cCGCGCgGCGGGCGCgCUccaUGcgcUCGGCgaacucgggGCGg -3'
miRNA:   3'- -GCGCG-CGCUCGUG-GA---AC---AGCCGa--------CGC- -5'
26554 5' -59.9 NC_005357.1 + 30273 0.67 0.350127
Target:  5'- gGuCGCGCGAGuCGCCggaaaacGUCGGguagcgcccCUGCGa -3'
miRNA:   3'- gC-GCGCGCUC-GUGGaa-----CAGCC---------GACGC- -5'
26554 5' -59.9 NC_005357.1 + 9897 0.67 0.341917
Target:  5'- gGCGCGUG-GCGa--UGUCGaGCUGCa -3'
miRNA:   3'- gCGCGCGCuCGUggaACAGC-CGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.